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GENE CARD

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  1. Gene 'KH2012:KH.C3.889'

Gene Card

Best human hits

MMS19

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006102

Gene Model ID

KH2012:KH.C3.889

Location

KhC3:4209788..4214285

Transcript Models and Sequences

  KH2012:KH.C3.889.v2.A.ND2-1
KH2012:KH.C3.889.v2.A.nonSL4-1
KH2012:KH.C3.889.v2.A.nonSL5-1
KH2012:KH.C3.889.v3.A.SL3-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000004390
NCBI Reference Sequence XM_018811253.1
Collections

Gateway full ORF

2 results

cien195231

Plate: VES100_B15

cien207300

Plate: VES102_O11

Gene collection 1 (N. Satoh)

2 results

cieg044o13

Plate: R1CiGC22b12

citb083a10

Plate: R1CiGC46f05

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
ARM-type_fold SUPERFAMILY Armadillo-type fold
MMS19_C Pfam MMS19, C-terminal
ARM-like Gene3D Armadillo-like helical

GOSlim

29 results

GO Term Annotation Origin Type
transcription coactivator activity Orthology molecular function
binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
cytoskeleton Orthology cellular component
DNA metabolic process Orthology biological process
DNA repair Orthology biological process
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
cellular response to DNA damage stimulus Orthology biological process
membrane Orthology cellular component
enzyme binding Orthology molecular function
positive regulation of transcription, DNA-templated Orthology biological process
intracellular signal transduction Orthology biological process
nucleoplasm part Orthology cellular component
macromolecular complex Orthology cellular component
cytoskeletal part Orthology cellular component
microtubule cytoskeleton Orthology cellular component
cellular process Orthology biological process
response to organic substance Orthology biological process
cellular metabolic process Orthology biological process
positive regulation of signal transduction Orthology biological process
receptor binding Orthology molecular function
transcription factor binding Orthology molecular function
gene expression Orthology biological process
protein metabolic process Orthology biological process

GO (Orthology)

29 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
phosphorelay signal transduction system Hs biological process
transcription coactivator activity Hs molecular function
binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
holo TFIIH complex Hs cellular component
cytoplasm Hs cellular component
spindle Hs cellular component
cytosol Hs cellular component
cytoskeleton Hs cellular component
DNA metabolic process Hs biological process
DNA repair Hs biological process
nucleotide-excision repair Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
cellular response to DNA damage stimulus Hs biological process
chromosome segregation Hs biological process
response to hormone Hs biological process
membrane Hs cellular component
iron-sulfur cluster assembly Hs biological process
enzyme binding Hs molecular function
receptor signaling complex scaffold activity Hs molecular function
estrogen receptor binding Hs molecular function
protein binding, bridging Hs molecular function
positive regulation of transcription, DNA-templated Hs biological process
MMXD complex Hs cellular component
CIA complex Hs cellular component
protein maturation by iron-sulfur cluster transfer Hs biological process

GO (Blast)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
transcription coactivator activity Hs molecular function 419 7.71e-130
binding Hs molecular function 419 7.71e-130
protein binding Hs molecular function 419 7.71e-130
nucleus Hs cellular component 419 7.71e-130
nucleoplasm Hs cellular component 419 7.71e-130
holo TFIIH complex Hs cellular component 419 7.71e-130
cytoplasm Hs cellular component 419 7.71e-130
spindle Hs cellular component 419 7.71e-130
cytosol Hs cellular component 419 7.71e-130
cytoskeleton Hs cellular component 419 7.71e-130
membrane Hs cellular component 419 7.71e-130
enzyme binding Hs molecular function 419 7.71e-130
receptor signaling complex scaffold activity Hs molecular function 419 7.71e-130
estrogen receptor binding Hs molecular function 419 7.71e-130
protein binding, bridging Hs molecular function 419 7.71e-130
MMXD complex Hs cellular component 419 7.71e-130
CIA complex Hs cellular component 419 7.71e-130

GO (InterProScan)

1 result

GO Term Analysis Type e-value
binding SUPERFAMILY molecular function 1.73E-29

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