Aniseed - Gene card

Gene Card

Best human hits

BCL2L2-PABPN1; PABPN1; PABPN1L

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006029

Gene Model ID

KH2012:KH.C3.820

Location

KhC3:5074030..5079673

Transcript Models and Sequences

KH2012:KH.C3.820.v1.C.nonSL10-1
KH2012:KH.C3.820.v1.C.nonSL11-1
KH2012:KH.C3.820.v1.C.nonSL12-1
KH2012:KH.C3.820.v1.C.nonSL13-1
KH2012:KH.C3.820.v1.C.nonSL2-1
KH2012:KH.C3.820.v1.C.nonSL3-1
KH2012:KH.C3.820.v1.C.nonSL4-1
KH2012:KH.C3.820.v1.C.nonSL5-1
KH2012:KH.C3.820.v1.C.nonSL6-1
KH2012:KH.C3.820.v1.C.nonSL7-1
KH2012:KH.C3.820.v1.C.nonSL8-1
KH2012:KH.C3.820.v1.C.nonSL9-1
KH2012:KH.C3.820.v1.C.SL1-1
KH2012:KH.C3.820.v1.C.SL14-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000012468
NCBI Reference Sequence	XM_002131874.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

3 results

cigd020f22

Plate: R1CiGC41g18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
RRM_dom	Pfam	RNA recognition motif domain
RRM_dom	ProSiteProfiles	RNA recognition motif domain
PABP2	PANTHER	Polyadenylate-binding protein 2
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
RRM_dom	SMART	RNA recognition motif domain

GOSlim

31 results

GO Term	Annotation Origin	Type
nucleic acid binding	Blast	molecular function
RNA binding	Blast	molecular function
protein binding	Orthology	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Orthology	cellular component
mitochondrion	Orthology	cellular component
apoptotic process	Orthology	biological process
spermatogenesis	Orthology	biological process
membrane	Orthology	cellular component
nuclear speck	Blast	cellular component
mitochondrial membrane	Orthology	cellular component
identical protein binding	Orthology	molecular function
protein homodimerization activity	Orthology	molecular function
regulation of apoptotic process	Orthology	biological process
negative regulation of apoptotic process	Orthology	biological process
protein heterodimerization activity	Orthology	molecular function
extracellular exosome	Orthology	cellular component
cytosol	Orthology	cellular component
integral component of membrane	Orthology	cellular component
whole membrane	Orthology	cellular component
bounding membrane of organelle	Orthology	cellular component
intracellular signal transduction	Orthology	biological process
cellular response to DNA damage stimulus	Orthology	biological process
macromolecular complex	Orthology	cellular component
cell surface receptor signaling pathway	Orthology	biological process
negative regulation of signal transduction	Orthology	biological process
nuclear part	Blast	cellular component
enzyme binding	Blast	molecular function
transferase activity, transferring phosphorus-containing groups	InterProScan	molecular function
positive regulation of catalytic activity	InterProScan	biological process

GO (Orthology)

22 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
protein binding	Hs	molecular function
cytoplasm	Hs	cellular component
mitochondrion	Hs	cellular component
mitochondrial outer membrane	Hs	cellular component
apoptotic process	Hs	biological process
spermatogenesis	Hs	biological process
intrinsic apoptotic signaling pathway in response to DNA damage	Hs	biological process
membrane	Hs	cellular component
mitochondrial membrane	Hs	cellular component
identical protein binding	Hs	molecular function
protein homodimerization activity	Hs	molecular function
regulation of apoptotic process	Hs	biological process
negative regulation of apoptotic process	Hs	biological process
protein heterodimerization activity	Hs	molecular function
extracellular exosome	Hs	cellular component
Bcl-2 family protein complex	Hs	cellular component
extrinsic apoptotic signaling pathway in absence of ligand	Hs	biological process
disordered domain specific binding	Hs	molecular function
negative regulation of intrinsic apoptotic signaling pathway	Hs	biological process
cytosol	Hs	cellular component
integral component of membrane	Hs	cellular component
BH domain binding	Hs	molecular function

GO (Blast)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	229	5.00e-75
RNA binding	Hs	molecular function	229	5.00e-75
protein binding	Hs	molecular function	229	5.00e-75
nucleus	Hs	cellular component	229	5.00e-75
nucleoplasm	Hs	cellular component	229	5.00e-75
cytoplasm	Hs	cellular component	229	5.00e-75
mitochondrion	Hs	cellular component	224	1.00e-72
mitochondrial outer membrane	Hs	cellular component	224	1.00e-72
membrane	Hs	cellular component	224	1.00e-72
nuclear speck	Hs	cellular component	229	5.00e-75
intracellular ribonucleoprotein complex	Hs	cellular component	229	5.00e-75
mitochondrial membrane	Hs	cellular component	224	1.00e-72
nuclear inclusion body	Hs	cellular component	229	5.00e-75
identical protein binding	Hs	molecular function	224	1.00e-72
protein homodimerization activity	Hs	molecular function	224	1.00e-72
protein heterodimerization activity	Hs	molecular function	224	1.00e-72
extracellular exosome	Hs	cellular component	224	1.00e-72
RNA polymerase binding	Hs	molecular function	229	5.00e-75
Bcl-2 family protein complex	Hs	cellular component	224	1.00e-72
disordered domain specific binding	Hs	molecular function	224	1.00e-72

GO (InterProScan)