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GENE CARD

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Gene Card

Best human hits

TPM1; TPM3; TPM4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006022

Gene Model ID

KH2012:KH.C3.814

Location

KhC3:4229143..4231996

Transcript Models and Sequences

  KH2012:KH.C3.814.v1.C.nonSL1-1

External Database Gene Card

External database links

2 results

Database Gene ID
NCBI Reference Sequence XM_002128275.3
NCBI Reference Sequence XM_004225794.3
Collections

Gateway full ORF

2 results

cien44487

Plate: VES77_E09

cien93973

Plate: VES85_K01

Gene collection 1 (N. Satoh)

1 result

cilv012h09

Plate: R1CiGC26a15

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

13 results

Gene Phylogeny

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Gene Annotations

InterPro

2 results

IPR Term Analysis Definition
Tropomyosin Pfam Tropomyosin
Tropomyosin PRINTS Tropomyosin

GOSlim

41 results

GO Term Annotation Origin Type
actin binding Orthology molecular function
calcium ion binding Orthology molecular function
protein binding Orthology molecular function
cytoplasm Orthology cellular component
cytosol Orthology cellular component
cytoskeleton Orthology cellular component
focal adhesion Orthology cellular component
cytoskeletal protein binding Orthology molecular function
membrane Orthology cellular component
integral component of membrane Orthology cellular component
wound healing Orthology biological process
identical protein binding Orthology molecular function
protein homodimerization activity Orthology molecular function
metal ion binding Orthology molecular function
protein heterodimerization activity Orthology molecular function
actin filament binding Orthology molecular function
extracellular exosome Orthology cellular component
cell differentiation Orthology biological process
cytoskeletal part Orthology cellular component
macromolecular complex Orthology cellular component
organelle organization Orthology biological process
structural molecule activity Orthology molecular function
cytoplasmic part Orthology cellular component
cell morphogenesis Orthology biological process
intracellular non-membrane-bounded organelle Orthology cellular component
organelle part Orthology cellular component
cell migration Orthology biological process
cell periphery Orthology cellular component
cell projection organization Orthology biological process
cell projection Orthology cellular component
plasma membrane region Orthology cellular component
cell projection membrane Orthology cellular component
cell leading edge Orthology cellular component
positive regulation of hydrolase activity Orthology biological process
nucleoside-triphosphatase activity Orthology molecular function
cellular response to stress Orthology biological process
response to oxidative stress Orthology biological process
cell development Orthology biological process
cell adhesion Orthology biological process
heart development Orthology biological process
anatomical structure morphogenesis Orthology biological process

GO (Orthology)

47 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
osteoblast differentiation Hs biological process
stress fiber Hs cellular component
podosome Hs cellular component
actin binding Hs molecular function
structural constituent of cytoskeleton Hs molecular function
calcium ion binding Hs molecular function
protein binding Hs molecular function
cytoplasm Hs cellular component
cytosol Hs cellular component
cytoskeleton Hs cellular component
muscle thin filament tropomyosin Hs cellular component
actin filament Hs cellular component
focal adhesion Hs cellular component
muscle contraction Hs biological process
regulation of muscle contraction Hs biological process
cytoskeleton organization Hs biological process
actin filament organization Hs biological process
regulation of heart contraction Hs biological process
cytoskeletal protein binding Hs molecular function
structural constituent of muscle Hs molecular function
regulation of cell shape Hs biological process
actin cytoskeleton Hs cellular component
membrane Hs cellular component
integral component of membrane Hs cellular component
myofibril Hs cellular component
sarcomere Hs cellular component
negative regulation of cell migration Hs biological process
cortical cytoskeleton Hs cellular component
ruffle organization Hs biological process
filamentous actin Hs cellular component
bleb Hs cellular component
ruffle membrane Hs cellular component
positive regulation of ATPase activity Hs biological process
cellular response to reactive oxygen species Hs biological process
wound healing Hs biological process
identical protein binding Hs molecular function
protein homodimerization activity Hs molecular function
sarcomere organization Hs biological process
positive regulation of cell adhesion Hs biological process
metal ion binding Hs molecular function
protein heterodimerization activity Hs molecular function
actin filament binding Hs molecular function
positive regulation of stress fiber assembly Hs biological process
ventricular cardiac muscle tissue morphogenesis Hs biological process
cardiac muscle contraction Hs biological process
extracellular exosome Hs cellular component
regulation of ATPase activity Hs biological process

GO (Blast)

29 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
stress fiber Hs cellular component 304 1.71e-103
podosome Hs cellular component 302 2.14e-103
actin binding Hs molecular function 304 1.71e-103
structural constituent of cytoskeleton Hs molecular function 304 1.71e-103
calcium ion binding Hs molecular function 302 2.14e-103
protein binding Hs molecular function 304 1.71e-103
cytoplasm Hs cellular component 304 1.71e-103
cytosol Hs cellular component 304 1.71e-103
cytoskeleton Hs cellular component 304 1.71e-103
muscle thin filament tropomyosin Hs cellular component 304 1.71e-103
actin filament Hs cellular component 304 1.71e-103
focal adhesion Hs cellular component 302 2.14e-103
cytoskeletal protein binding Hs molecular function 304 1.71e-103
structural constituent of muscle Hs molecular function 304 1.71e-103
actin cytoskeleton Hs cellular component 304 1.71e-103
membrane Hs cellular component 304 1.71e-103
integral component of membrane Hs cellular component 304 1.71e-103
myofibril Hs cellular component 304 1.71e-103
sarcomere Hs cellular component 304 1.71e-103
cortical cytoskeleton Hs cellular component 302 2.14e-103
filamentous actin Hs cellular component 304 1.71e-103
bleb Hs cellular component 304 1.71e-103
ruffle membrane Hs cellular component 304 1.71e-103
identical protein binding Hs molecular function 304 1.71e-103
protein homodimerization activity Hs molecular function 304 1.71e-103
metal ion binding Hs molecular function 302 2.14e-103
protein heterodimerization activity Hs molecular function 304 1.71e-103
actin filament binding Hs molecular function 304 1.71e-103
extracellular exosome Hs cellular component 302 2.14e-103

GO (InterProScan)

No result

GO Term Analysis Type e-value

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