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GENE CARD

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  1. Gene 'KH2012:KH.C3.67'

Gene Card

Best human hits

IRX2; IRX5; IRX6

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005867

Gene Model ID

KH2012:KH.C3.67

Location

KhC3:5798957..5808102

Transcript Models and Sequences

  KH2012:KH.C3.67.v1.B.ND1-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000006449
Collections

Gateway full ORF

1 result

cima866646

Plate: VES65_L23

Gene collection 1 (N. Satoh)

1 result

citb016c09

Plate: R1CiGC30n12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
Homeobox_CS ProSitePatterns Homeobox, conserved site
Homeobox_dom ProSiteProfiles Homeobox domain
Homeobox_KN_domain Pfam Homeobox KN domain
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily
Homeobox_dom CDD Homeobox domain
Homeobox_dom SMART Homeobox domain

GOSlim

17 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
DNA binding Orthology molecular function
nucleus Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
visual perception Orthology biological process
regulation of gene expression Orthology biological process
sequence-specific DNA binding Orthology molecular function
cell development Orthology biological process
response to stimulus Orthology biological process
small molecule binding Orthology molecular function
organic cyclic compound binding Orthology molecular function
reproductive process Orthology biological process
animal organ development Orthology biological process
anatomical structure morphogenesis Orthology biological process

GO (Orthology)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function
regulation of heart rate Hs biological process
DNA binding Hs molecular function
vitamin D binding Hs molecular function
nucleus Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
visual perception Hs biological process
gonad development Hs biological process
regulation of gene expression Hs biological process
sequence-specific DNA binding Hs molecular function
cell development Hs biological process
embryonic cranial skeleton morphogenesis Hs biological process
response to stimulus Hs biological process

GO (Blast)

6 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 176 1.22e-48
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 149 8.82e-39
DNA binding Hs molecular function 176 1.22e-48
vitamin D binding Hs molecular function 149 1.02e-38
nucleus Hs cellular component 176 1.22e-48
sequence-specific DNA binding Hs molecular function 176 1.22e-48

GO (InterProScan)

3 results

GO Term Analysis Type e-value
DNA binding SUPERFAMILY molecular function 2.01E-17
regulation of transcription, DNA-templated Pfam biological process 1.2E-14
sequence-specific DNA binding ProSitePatterns molecular function

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