Aniseed - Gene card

Gene Card

Best human hits

MID1; TRIM36; TRIM46

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005746

Gene Model ID

KH2012:KH.C3.557

Location

KhC3:3693797..3703529

Transcript Models and Sequences

KH2012:KH.C3.557.v1.R.SL1-1
KH2012:KH.C3.557.v2.B.nonSL3-2
KH2012:KH.C3.557.v2.B.nonSL4-2
KH2012:KH.C3.557.v2.B.nonSL5-2
KH2012:KH.C3.557.v2.B.nonSL6-2
KH2012:KH.C3.557.v2.B.nonSL7-2
KH2012:KH.C3.557.v2.B.nonSL8-2
KH2012:KH.C3.557.v2.B.SL1-2
KH2012:KH.C3.557.v3.A.ND2-2

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000009397
ENSEMBL	ENSCING00000012673
NCBI Reference Sequence	XM_009859730.2
NCBI Reference Sequence	XM_018811376.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cicl002b08

Plate: R1CiGC08e06

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

12 results

IPR Term	Analysis	Definition
Znf_B-box	Pfam	B-box-type zinc finger
Znf-RING_LisH	Pfam	RING-type zinc-finger, LisH dimerisation motif
Znf_B-box	CDD	B-box-type zinc finger
Znf_B-box	SMART	B-box-type zinc finger
Znf_RING	SMART	Zinc finger, RING-type
Znf_B-box	ProSiteProfiles	B-box-type zinc finger
Znf_RING/FYVE/PHD	Gene3D	Zinc finger, RING/FYVE/PHD-type
Ig-like_fold	Gene3D	Immunoglobulin-like fold
FN3_sf	SUPERFAMILY	Fibronectin type III superfamily
FN3_dom	ProSiteProfiles	Fibronectin type III
COS_domain	ProSiteProfiles	COS domain
FN3_dom	CDD	Fibronectin type III

GOSlim

43 results

GO Term	Annotation Origin	Type
protein polyubiquitination	Orthology	biological process
ubiquitin-protein transferase activity	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
cytoskeleton	Orthology	cellular component
microtubule	Blast	cellular component
axonogenesis	Orthology	biological process
microtubule binding	Blast	molecular function
zinc ion binding	Orthology	molecular function
microtubule cytoskeleton	Blast	cellular component
membrane	Blast	cellular component
integral component of membrane	Blast	cellular component
protein ubiquitination	Orthology	biological process
transferase activity	Orthology	molecular function
axon	Orthology	cellular component
cytoplasmic vesicle	Orthology	cellular component
ubiquitin protein ligase binding	Blast	molecular function
identical protein binding	Blast	molecular function
protein homodimerization activity	Blast	molecular function
cell projection	Orthology	cellular component
metal ion binding	Orthology	molecular function
protein heterodimerization activity	Blast	molecular function
extracellular exosome	Orthology	cellular component
microtubule-based process	Orthology	biological process
organelle organization	Orthology	biological process
membrane organization	Orthology	biological process
cell division	Orthology	biological process
endomembrane system	Orthology	cellular component
cell migration	Orthology	biological process
generation of neurons	Orthology	biological process
sexual reproduction	Orthology	biological process
tubulin binding	Orthology	molecular function
cell projection part	Orthology	cellular component
microtubule-based movement	Orthology	biological process
intracellular transport	Orthology	biological process
cytoplasmic part	Orthology	cellular component
synapse	Orthology	cellular component
cell cycle	Orthology	biological process
neuron projection	Orthology	cellular component
cytoskeletal part	Blast	cellular component
macromolecular complex	Blast	cellular component

GO (Orthology)

30 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
protein polyubiquitination	Hs	biological process
microtubule cytoskeleton organization	Hs	biological process
mitotic cytokinesis	Hs	biological process
microtubule bundle formation	Hs	biological process
acrosomal vesicle	Hs	cellular component
neuron migration	Hs	biological process
ubiquitin-protein transferase activity	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
cytoskeleton	Hs	cellular component
spindle organization	Hs	biological process
acrosome reaction	Hs	biological process
axonogenesis	Hs	biological process
zinc ion binding	Hs	molecular function
protein ubiquitination	Hs	biological process
transferase activity	Hs	molecular function
axon	Hs	cellular component
cytoplasmic vesicle	Hs	cellular component
cell projection	Hs	cellular component
alpha-tubulin binding	Hs	molecular function
axon initial segment	Hs	cellular component
metal ion binding	Hs	molecular function
anterograde synaptic vesicle transport	Hs	biological process
regulation of cell cycle	Hs	biological process
extracellular exosome	Hs	cellular component
regulation of microtubule cytoskeleton organization	Hs	biological process
axon cytoplasm	Hs	cellular component
proximal neuron projection	Hs	cellular component

GO (Blast)

31 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
acrosomal vesicle	Hs	cellular component	257	4.28e-74
ubiquitin-protein transferase activity	Hs	molecular function	257	4.28e-74
protein binding	Hs	molecular function	257	4.28e-74
intracellular	Hs	cellular component	257	4.28e-74
cytoplasm	Hs	cellular component	257	4.28e-74
spindle	Hs	cellular component	150	1.77e-37
cytosol	Hs	cellular component	257	4.28e-74
cytoskeleton	Hs	cellular component	257	4.28e-74
microtubule	Hs	cellular component	150	1.77e-37
microtubule associated complex	Hs	cellular component	150	1.77e-37
cytoplasmic microtubule	Hs	cellular component	150	1.77e-37
microtubule binding	Hs	molecular function	150	1.77e-37
zinc ion binding	Hs	molecular function	257	4.28e-74
microtubule cytoskeleton	Hs	cellular component	150	1.77e-37
membrane	Hs	cellular component	150	1.77e-37
integral component of membrane	Hs	cellular component	150	1.77e-37
transferase activity	Hs	molecular function	257	4.28e-74
axon	Hs	cellular component	226	1.26e-62
cytoplasmic vesicle	Hs	cellular component	257	4.28e-74
ubiquitin protein ligase binding	Hs	molecular function	150	1.77e-37
identical protein binding	Hs	molecular function	150	1.77e-37
protein homodimerization activity	Hs	molecular function	150	1.77e-37
cell projection	Hs	cellular component	226	1.26e-62
alpha-tubulin binding	Hs	molecular function	257	4.28e-74
axon initial segment	Hs	cellular component	226	1.26e-62
metal ion binding	Hs	molecular function	257	4.28e-74
protein heterodimerization activity	Hs	molecular function	150	1.77e-37
phosphoprotein binding	Hs	molecular function	150	1.77e-37
extracellular exosome	Hs	cellular component	257	4.28e-74
axon cytoplasm	Hs	cellular component	226	1.26e-62
proximal neuron projection	Hs	cellular component	226	1.26e-62

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
protein binding	SUPERFAMILY	molecular function	9.58E-10
intracellular	Pfam	cellular component	9.5E-7
zinc ion binding	Pfam	molecular function	9.5E-7