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GENE CARD

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  1. Gene 'KH2012:KH.C3.642' > 
  2. Gene 'Boleac.CG.SB_v3.S25....' > 

Gene Card

Best human hits

SIX1; SIX2; SIX6

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005742

Gene Model ID

KH2012:KH.C3.553

Location

KhC3:1271770..1281319

Transcript Models and Sequences

  KH2012:KH.C3.553.v1.A.nonSL2-2
KH2012:KH.C3.553.v1.A.SL1-2
KH2012:KH.C3.553.v1.R.SL1-1
KH2012:KH.C3.553.v2.A.nonSL2-2
KH2012:KH.C3.553.v2.A.SL1-2

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000017004
ENSEMBL ENSCING00000022188
NCBI Reference Sequence NM_001078346.1
Collections

Gateway full ORF

1 result

cima831450

Plate: VES62_M02

Gene collection 1 (N. Satoh)

1 result

ciad046p13

Plate: R1CiGC05e01

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

1 results

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
Homeobox_dom SMART Homeobox domain
Homeobox_dom CDD Homeobox domain
Homeobox_dom Pfam Homeobox domain
Homeobox_CS ProSitePatterns Homeobox, conserved site
Homeobox_dom ProSiteProfiles Homeobox domain
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily
SIX1_SD Pfam Homeobox protein SIX1, N-terminal SD domain

GOSlim

49 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
DNA binding Orthology molecular function
chromatin binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
apoptotic process Orthology biological process
multicellular organism development Orthology biological process
sensory perception of sound Orthology biological process
transcription factor binding Orthology molecular function
cell proliferation Orthology biological process
anatomical structure morphogenesis Orthology biological process
regulation of gene expression Orthology biological process
cell migration Orthology biological process
neurogenesis Orthology biological process
negative regulation of apoptotic process Orthology biological process
sequence-specific DNA binding Orthology molecular function
transcription regulatory region DNA binding Orthology molecular function
macromolecular complex binding Orthology molecular function
positive regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
animal organ development Orthology biological process
generation of neurons Orthology biological process
anatomical structure development Orthology biological process
anatomical structure formation involved in morphogenesis Orthology biological process
cell-cell signaling Orthology biological process
cell differentiation Orthology biological process
heart development Orthology biological process
intracellular part Orthology cellular component
macromolecular complex Orthology cellular component
intracellular protein transport Orthology biological process
establishment of protein localization to organelle Orthology biological process
nervous system development Orthology biological process
central nervous system development Orthology biological process
protein localization Orthology biological process
protein localization to organelle Orthology biological process
cell development Orthology biological process
neuron differentiation Orthology biological process
immune system process Orthology biological process
regulation of cell proliferation Orthology biological process
system development Orthology biological process
positive regulation of cell proliferation Orthology biological process

GO (Orthology)

74 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
transcription coactivator binding Hs molecular function
ureteric bud development Hs biological process
branching involved in ureteric bud morphogenesis Hs biological process
organ induction Hs biological process
kidney development Hs biological process
chondrocyte differentiation Hs biological process
outflow tract morphogenesis Hs biological process
DNA binding Hs molecular function
chromatin binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
transcription factor complex Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
protein import into nucleus Hs biological process
apoptotic process Hs biological process
multicellular organism development Hs biological process
pattern specification process Hs biological process
mesodermal cell fate specification Hs biological process
skeletal muscle tissue development Hs biological process
sensory perception of sound Hs biological process
transcription factor binding Hs molecular function
cell proliferation Hs biological process
regulation of synaptic growth at neuromuscular junction Hs biological process
anatomical structure morphogenesis Hs biological process
anterior/posterior axis specification Hs biological process
regulation of gene expression Hs biological process
cell migration Hs biological process
facial nerve morphogenesis Hs biological process
neurogenesis Hs biological process
regulation of ossification Hs biological process
epithelial cell differentiation Hs biological process
thyroid gland development Hs biological process
olfactory placode formation Hs biological process
regulation of chondrocyte differentiation Hs biological process
regulation of protein localization Hs biological process
protein localization to nucleus Hs biological process
inner ear morphogenesis Hs biological process
negative regulation of apoptotic process Hs biological process
negative regulation of neuron apoptotic process Hs biological process
sequence-specific DNA binding Hs molecular function
transcription regulatory region DNA binding Hs molecular function
macromolecular complex binding Hs molecular function
negative regulation of cell differentiation Hs biological process
regulation of neuron differentiation Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
animal organ development Hs biological process
thymus development Hs biological process
embryonic digestive tract morphogenesis Hs biological process
neuron fate specification Hs biological process
generation of neurons Hs biological process
embryonic cranial skeleton morphogenesis Hs biological process
skeletal system morphogenesis Hs biological process
inner ear development Hs biological process
anatomical structure development Hs biological process
regulation of epithelial cell proliferation Hs biological process
myoblast migration Hs biological process
pharyngeal system development Hs biological process
myotome development Hs biological process
trigeminal ganglion development Hs biological process
otic vesicle development Hs biological process
renal system development Hs biological process
positive regulation of secondary heart field cardioblast proliferation Hs biological process
positive regulation of branching involved in ureteric bud morphogenesis Hs biological process
regulation of skeletal muscle cell differentiation Hs biological process

GO (Blast)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 364 2.30e-125
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 364 2.30e-125
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 364 2.30e-125
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 259 1.36e-84
transcription coactivator binding Hs molecular function 364 2.30e-125
DNA binding Hs molecular function 364 2.30e-125
chromatin binding Hs molecular function 364 2.30e-125
transcription factor activity, sequence-specific DNA binding Hs molecular function 364 2.30e-125
protein binding Hs molecular function 364 2.30e-125
nucleus Hs cellular component 364 2.30e-125
transcription factor complex Hs cellular component 364 2.30e-125
nucleolus Hs cellular component 364 2.30e-125
cytoplasm Hs cellular component 364 2.30e-125
transcription factor binding Hs molecular function 362 1.95e-124
sequence-specific DNA binding Hs molecular function 364 2.30e-125
transcription regulatory region DNA binding Hs molecular function 364 2.30e-125
macromolecular complex binding Hs molecular function 362 1.95e-124

GO (InterProScan)

3 results

GO Term Analysis Type e-value
DNA binding CDD molecular function 1.60756E-17
regulation of transcription, DNA-templated ProSitePatterns biological process
sequence-specific DNA binding ProSitePatterns molecular function

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