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GENE CARD

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Gene Card

Best human hits

BBS4; TTC6; TTC8

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005716

Gene Model ID

KH2012:KH.C3.53

Location

KhC3:3555381..3564325

Transcript Models and Sequences

  KH2012:KH.C3.53.v1.A.nonSL10-1
KH2012:KH.C3.53.v1.A.nonSL2-1
KH2012:KH.C3.53.v1.A.nonSL3-1
KH2012:KH.C3.53.v1.A.nonSL4-1
KH2012:KH.C3.53.v1.A.nonSL5-1
KH2012:KH.C3.53.v1.A.nonSL7-1
KH2012:KH.C3.53.v1.A.nonSL8-1
KH2012:KH.C3.53.v1.A.nonSL9-1
KH2012:KH.C3.53.v1.A.SL6-1
KH2012:KH.C3.53.v1.R.ND1-1

External Database Gene Card

External database links

1 result

Database Gene ID
NCBI Reference Sequence XM_002125694.4
Collections

Gateway full ORF

3 results

cien44979

Plate: VES77_M09

cien72092

Plate: VES81_E15

cima899941

Plate: VES72_B18

Gene collection 1 (N. Satoh)

2 results

cieg036e03

Plate: R1CiGC21e12

cieg038a05

Plate: R1CiGC21h11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
TPR-like_helical_dom_sf Gene3D Tetratricopeptide-like helical domain superfamily
TPR_repeat SMART Tetratricopeptide repeat
TPR_repeat ProSiteProfiles Tetratricopeptide repeat
TPR_repeat Pfam Tetratricopeptide repeat
TPR-like_helical_dom_sf SUPERFAMILY Tetratricopeptide-like helical domain superfamily
TPR-contain_dom ProSiteProfiles Tetratricopeptide repeat-containing domain

GOSlim

60 results

GO Term Annotation Origin Type
microtubule motor activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
cytoplasm Orthology cellular component
centrosome Orthology cellular component
microtubule organizing center Orthology cellular component
cytosol Orthology cellular component
cytoskeleton Orthology cellular component
plasma membrane Orthology cellular component
visual perception Orthology biological process
protein localization Orthology biological process
negative regulation of gene expression Orthology biological process
protein transport Orthology biological process
membrane Orthology cellular component
integral component of membrane Orthology cellular component
cell projection organization Orthology biological process
protein localization to organelle Orthology biological process
cell projection Orthology cellular component
intracellular transport Orthology biological process
response to stimulus Orthology biological process
microtubule-based process Orthology biological process
organelle organization Orthology biological process
membrane organization Orthology biological process
cell division Orthology biological process
transcription factor binding Orthology molecular function
organelle part Orthology cellular component
cell projection part Orthology cellular component
neuron projection Orthology cellular component
macromolecular complex Orthology cellular component
cell migration Orthology biological process
generation of neurons Orthology biological process
anatomical structure formation involved in morphogenesis Orthology biological process
nervous system development Orthology biological process
neuron part Orthology cellular component
heart development Orthology biological process
anatomical structure morphogenesis Orthology biological process
cytoplasmic part Orthology cellular component
organelle Orthology cellular component
plasma membrane region Orthology cellular component
spermatogenesis Orthology biological process
cell development Orthology biological process
sensory perception Orthology biological process
neuron projection development Orthology biological process
organic substance metabolic process Orthology biological process
brain development Orthology biological process
cellular process Orthology biological process
cytokine-mediated signaling pathway Orthology biological process
regulation of GTPase activity Orthology biological process
cytoskeletal protein binding Orthology molecular function
neuron development Orthology biological process
cellular component organization Orthology biological process
developmental process Orthology biological process
tubulin binding Orthology molecular function
cell differentiation Orthology biological process
animal organ development Orthology biological process
cell projection membrane Orthology cellular component
bounding membrane of organelle Orthology cellular component
cell motility Orthology biological process
microtubule-based movement Orthology biological process
head development Orthology biological process

GO (Orthology)

77 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
microtubule cytoskeleton organization Hs biological process
pericentriolar material Hs cellular component
mitotic cytokinesis Hs biological process
RNA polymerase II repressing transcription factor binding Hs molecular function
photoreceptor outer segment Hs cellular component
neuron migration Hs biological process
neural tube closure Hs biological process
retina homeostasis Hs biological process
photoreceptor inner segment Hs cellular component
heart looping Hs biological process
negative regulation of systemic arterial blood pressure Hs biological process
microtubule motor activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
cytoplasm Hs cellular component
centrosome Hs cellular component
centriole Hs cellular component
microtubule organizing center Hs cellular component
cytosol Hs cellular component
cytoskeleton Hs cellular component
plasma membrane Hs cellular component
cilium Hs cellular component
centrosome cycle Hs biological process
spermatid development Hs biological process
visual perception Hs biological process
sensory perception of smell Hs biological process
protein localization Hs biological process
negative regulation of gene expression Hs biological process
protein transport Hs biological process
membrane Hs cellular component
integral component of membrane Hs cellular component
dendrite development Hs biological process
regulation of lipid metabolic process Hs biological process
ventricular system development Hs biological process
cerebral cortex development Hs biological process
cell projection organization Hs biological process
adult behavior Hs biological process
negative regulation of actin filament polymerization Hs biological process
motile cilium Hs cellular component
photoreceptor connecting cilium Hs cellular component
melanosome transport Hs biological process
regulation of cytokinesis Hs biological process
leptin-mediated signaling pathway Hs biological process
protein localization to organelle Hs biological process
negative regulation of GTPase activity Hs biological process
centriolar satellite Hs cellular component
dynactin binding Hs molecular function
microtubule anchoring at centrosome Hs biological process
BBSome Hs cellular component
social behavior Hs biological process
photoreceptor cell outer segment organization Hs biological process
ciliary transition zone Hs cellular component
ciliary basal body Hs cellular component
negative regulation of appetite by leptin-mediated signaling pathway Hs biological process
positive regulation of multicellular organism growth Hs biological process
cell projection Hs cellular component
alpha-tubulin binding Hs molecular function
fat cell differentiation Hs biological process
photoreceptor cell maintenance Hs biological process
positive regulation of cilium assembly Hs biological process
retinal rod cell development Hs biological process
intracellular transport Hs biological process
beta-tubulin binding Hs molecular function
brain morphogenesis Hs biological process
response to stimulus Hs biological process
maintenance of protein location in nucleus Hs biological process
regulation of stress fiber assembly Hs biological process
ciliary membrane Hs cellular component
cilium assembly Hs biological process
regulation of cilium beat frequency involved in ciliary motility Hs biological process
face development Hs biological process
protein localization to cilium Hs biological process
protein localization to centrosome Hs biological process
non-motile cilium Hs cellular component
regulation of non-motile cilium assembly Hs biological process
protein localization to photoreceptor outer segment Hs biological process
non-motile cilium assembly Hs biological process

GO (Blast)

29 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
pericentriolar material Hs cellular component 506 5.35e-176
RNA polymerase II repressing transcription factor binding Hs molecular function 506 5.35e-176
photoreceptor outer segment Hs cellular component 506 5.35e-176
photoreceptor inner segment Hs cellular component 506 5.35e-176
microtubule motor activity Hs molecular function 506 5.35e-176
protein binding Hs molecular function 506 5.35e-176
nucleus Hs cellular component 506 5.35e-176
cytoplasm Hs cellular component 506 5.35e-176
centrosome Hs cellular component 506 5.35e-176
centriole Hs cellular component 506 5.35e-176
microtubule organizing center Hs cellular component 506 5.35e-176
cytosol Hs cellular component 506 5.35e-176
cytoskeleton Hs cellular component 506 5.35e-176
plasma membrane Hs cellular component 506 5.35e-176
cilium Hs cellular component 506 5.35e-176
membrane Hs cellular component 506 5.35e-176
integral component of membrane Hs cellular component 506 5.35e-176
motile cilium Hs cellular component 506 5.35e-176
photoreceptor connecting cilium Hs cellular component 506 5.35e-176
centriolar satellite Hs cellular component 506 5.35e-176
dynactin binding Hs molecular function 506 5.35e-176
BBSome Hs cellular component 506 5.35e-176
ciliary transition zone Hs cellular component 506 5.35e-176
ciliary basal body Hs cellular component 506 5.35e-176
cell projection Hs cellular component 506 5.35e-176
alpha-tubulin binding Hs molecular function 506 5.35e-176
beta-tubulin binding Hs molecular function 506 5.35e-176
ciliary membrane Hs cellular component 506 5.35e-176
non-motile cilium Hs cellular component 506 5.35e-176

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding Gene3D molecular function 1.7E-40

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