Aniseed - Gene card

Gene 'KH2012:KH.C3.447'

Gene Card

Best human hits

DUS1L; DUS2; DUS4L

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005628

Gene Model ID

KH2012:KH.C3.447

Location

KhC3:3057526..3067756

Transcript Models and Sequences

KH2012:KH.C3.447.v1.A.ND1-1
KH2012:KH.C3.447.v1.A.SL2-1
KH2012:KH.C3.447.v1.A.SL3-1

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000021599
ENSEMBL	ENSCING00000022620
ENSEMBL	ENSCING00000023091
NCBI Reference Sequence	XM_009859716.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg014n18

Plate: R1CiGC17p05

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
Aldolase_TIM	Gene3D	Aldolase-type TIM barrel
DUS-like_FMN-bd	CDD	DUS-like, FMN-binding domain
dsRBD_dom	Pfam	Double-stranded RNA-binding domain
tRNA_hU_synthase	Pfam	tRNA-dihydrouridine synthase
tRNA_hU_synthase	PANTHER	tRNA-dihydrouridine synthase

GOSlim

15 results

GO Term	Annotation Origin	Type
RNA binding	Orthology	molecular function
catalytic activity	Orthology	molecular function
protein binding	Orthology	molecular function
cytoplasm	Orthology	cellular component
mitochondrion	Orthology	cellular component
endoplasmic reticulum	Orthology	cellular component
cytosol	Orthology	cellular component
flavin adenine dinucleotide binding	Orthology	molecular function
oxidation-reduction process	Orthology	biological process
negative regulation of cell death	Orthology	biological process
RNA processing	Orthology	biological process
enzyme regulator activity	Orthology	molecular function
protein kinase binding	Orthology	molecular function
protein kinase activity	Orthology	molecular function
regulation of catalytic activity	Orthology	biological process

GO (Orthology)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
tRNA dihydrouridine synthesis	Hs	biological process
RNA binding	Hs	molecular function
double-stranded RNA binding	Hs	molecular function
catalytic activity	Hs	molecular function
protein kinase inhibitor activity	Hs	molecular function
protein binding	Hs	molecular function
cytoplasm	Hs	cellular component
mitochondrion	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
cytosol	Hs	cellular component
negative regulation of protein kinase activity	Hs	biological process
tRNA processing	Hs	biological process
oxidoreductase activity	Hs	molecular function
tRNA dihydrouridine synthase activity	Hs	molecular function
flavin adenine dinucleotide binding	Hs	molecular function
oxidation-reduction process	Hs	biological process
negative regulation of cell death	Hs	biological process

GO (Blast)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	388	5.87e-132
double-stranded RNA binding	Hs	molecular function	388	5.87e-132
catalytic activity	Hs	molecular function	388	5.87e-132
protein kinase inhibitor activity	Hs	molecular function	388	5.87e-132
protein binding	Hs	molecular function	388	5.87e-132
cytoplasm	Hs	cellular component	388	5.87e-132
mitochondrion	Hs	cellular component	388	5.87e-132
endoplasmic reticulum	Hs	cellular component	388	5.87e-132
cytosol	Hs	cellular component	388	5.87e-132
oxidoreductase activity	Hs	molecular function	388	5.87e-132
tRNA dihydrouridine synthase activity	Hs	molecular function	388	5.87e-132
flavin adenine dinucleotide binding	Hs	molecular function	388	5.87e-132

GO (InterProScan)