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GENE CARD

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Gene Card

Best human hits

ZFHX2; ZFHX3; ZFHX4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005624

Gene Model ID

KH2012:KH.C3.443

Location

KhC3:311313..329069

Transcript Models and Sequences

  KH2012:KH.C3.443.v1.A.SL1-1

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000011787
NCBI Reference Sequence NM_001048000.1
NCBI Reference Sequence XM_018817829.1
Collections

Gene collection 1 (N. Satoh)

1 result

citb015b12

Plate: R1CiGC30d12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

11 results

IPR Term Analysis Definition
Homeobox_dom ProSiteProfiles Homeobox domain
Homeobox_dom CDD Homeobox domain
Znf_C2H2_type ProSitePatterns Zinc finger C2H2-type
Homeobox_CS ProSitePatterns Homeobox, conserved site
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily
Homeobox_dom Pfam Homeobox domain
Znf_C2H2_type SMART Zinc finger C2H2-type
Matrin/U1-like-C_Znf_C2H2 SMART Matrin/U1-C-like, C2H2-type zinc finger
Znf_C2H2_sf SUPERFAMILY Zinc finger C2H2 superfamily
Znf_C2H2_type ProSiteProfiles Zinc finger C2H2-type
Homeobox_dom SMART Homeobox domain

GOSlim

19 results

GO Term Annotation Origin Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
nucleic acid binding Blast molecular function
DNA binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
regulation of transcription, DNA-templated InterProScan biological process
zinc ion binding Blast molecular function
nuclear body Blast cellular component
enzyme binding Blast molecular function
sequence-specific DNA binding Blast molecular function
metal ion binding Blast molecular function
protein dimerization activity Blast molecular function
transcription regulatory region sequence-specific DNA binding Blast molecular function
intracellular part Blast cellular component
macromolecular complex Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

19 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 186 1.20e-46
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 259 8.63e-69
core promoter sequence-specific DNA binding Hs molecular function 186 1.20e-46
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 186 1.20e-46
nucleic acid binding Hs molecular function 259 8.63e-69
DNA binding Hs molecular function 259 8.63e-69
transcription factor activity, sequence-specific DNA binding Hs molecular function 186 1.20e-46
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 186 1.20e-46
protein binding Hs molecular function 186 1.20e-46
nucleus Hs cellular component 259 8.63e-69
nucleoplasm Hs cellular component 186 1.20e-46
transcription factor complex Hs cellular component 186 1.20e-46
cytoplasm Hs cellular component 186 1.20e-46
zinc ion binding Hs molecular function 259 8.63e-69
nuclear body Hs cellular component 186 1.20e-46
enzyme binding Hs molecular function 186 1.20e-46
sequence-specific DNA binding Hs molecular function 259 8.63e-69
metal ion binding Hs molecular function 259 8.63e-69
protein dimerization activity Hs molecular function 186 1.20e-46

GO (InterProScan)

5 results

GO Term Analysis Type e-value
nucleic acid binding SMART molecular function 4.6E-4
DNA binding SMART molecular function 4.0E-20
regulation of transcription, DNA-templated ProSitePatterns biological process
zinc ion binding SMART molecular function 0.26
sequence-specific DNA binding ProSitePatterns molecular function

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