Aniseed - Gene card

Gene Card

Best human hits

TOX2; TOX3; TOX4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005503

Gene Model ID

KH2012:KH.C3.330

Location

KhC3:2044315..2052928

Transcript Models and Sequences

KH2012:KH.C3.330.v1.A.ND1-1
KH2012:KH.C3.330.v1.A.nonSL4-1
KH2012:KH.C3.330.v1.A.nonSL6-1
KH2012:KH.C3.330.v1.A.nonSL7-1
KH2012:KH.C3.330.v1.A.nonSL8-1
KH2012:KH.C3.330.v2.A.nonSL4-1
KH2012:KH.C3.330.v2.A.nonSL6-1
KH2012:KH.C3.330.v2.A.nonSL7-1
KH2012:KH.C3.330.v2.A.nonSL8-1
KH2012:KH.C3.330.v2.R.ND2-1
KH2012:KH.C3.330.v3.A.ND3-1
KH2012:KH.C3.330.v3.A.SL5-1

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000009516
NCBI Reference Sequence	NM_001078198.1
NCBI Reference Sequence	XM_009859653.2
NCBI Reference Sequence	XM_018817830.1

Collections

Gateway full ORF

3 results

Gene collection 1 (N. Satoh)

3 results

ciad005o22

Plate: R1CiGC01f01

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
HMG_box_dom	ProSiteProfiles	High mobility group box domain
HMG_box_dom	Pfam	High mobility group box domain
HMG_box_dom_sf	Gene3D	High mobility group box domain superfamily
HMG_box_dom_sf	SUPERFAMILY	High mobility group box domain superfamily
HMG_box_dom	SMART	High mobility group box domain

GOSlim

22 results

GO Term	Annotation Origin	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Orthology	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
DNA binding	Orthology	molecular function
chromatin binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
transcription from RNA polymerase II promoter	Orthology	biological process
apoptotic process	Orthology	biological process
protein homodimerization activity	Orthology	molecular function
regulation of apoptotic process	Orthology	biological process
positive regulation of transcription, DNA-templated	Orthology	biological process
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
intracellular non-membrane-bounded organelle	Orthology	cellular component
nuclear lumen	Orthology	cellular component
intracellular organelle part	Orthology	cellular component
negative regulation of apoptotic process	Orthology	biological process
macromolecular complex	Orthology	cellular component
cell part	Orthology	cellular component

GO (Orthology)

23 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear chromosome, telomeric region	Hs	cellular component
chromatin	Hs	cellular component
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function
DNA binding	Hs	molecular function
chromatin binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
apoptotic process	Hs	biological process
estrogen response element binding	Hs	molecular function
protein homodimerization activity	Hs	molecular function
regulation of apoptotic process	Hs	biological process
negative regulation of neuron apoptotic process	Hs	biological process
positive regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
phosphoprotein binding	Hs	molecular function
PTW/PP1 phosphatase complex	Hs	cellular component

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nuclear chromosome, telomeric region	Hs	cellular component	130	1.27e-31
chromatin	Hs	cellular component	130	1.27e-31
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	135	5.64e-34
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	136	8.83e-34
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	135	5.64e-34
DNA binding	Hs	molecular function	136	8.83e-34
chromatin binding	Hs	molecular function	136	8.83e-34
protein binding	Hs	molecular function	136	8.83e-34
nucleus	Hs	cellular component	136	8.83e-34
nucleoplasm	Hs	cellular component	135	5.64e-34
estrogen response element binding	Hs	molecular function	136	8.83e-34
protein homodimerization activity	Hs	molecular function	136	8.83e-34
phosphoprotein binding	Hs	molecular function	136	8.83e-34
PTW/PP1 phosphatase complex	Hs	cellular component	130	1.27e-31

GO (InterProScan)