Aniseed - Gene card

Gene 'KH2012:KH.C1.111' >
Gene 'KH2012:KH.C3.159'

Gene Card

Best human hits

RBM4B; ZC3H7A; ZC3H7B

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005316

Gene Model ID

KH2012:KH.C3.159

Location

KhC3:2194449..2204596

Transcript Models and Sequences

KH2012:KH.C3.159.v3.B.SL1-1

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000009532
ENSEMBL	ENSCING00000012786
NCBI Reference Sequence	XM_002126622.3
NCBI Reference Sequence	XM_018817911.1

Collections

Gateway full ORF

3 results

Gene collection 1 (N. Satoh)

1 result

cicl055d21

Plate: R1CiGC14f07

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
RRM_dom	SMART	RNA recognition motif domain
Znf_CCCH_sf	SUPERFAMILY	Zinc finger, CCCH-type superfamily
Znf_CCCH	ProSiteProfiles	Zinc finger, CCCH-type
RRM_dom	ProSiteProfiles	RNA recognition motif domain
Znf_C2H2_sf	SUPERFAMILY	Zinc finger C2H2 superfamily
RRM_dom	Pfam	RNA recognition motif domain
Znf_CCCH	SMART	Zinc finger, CCCH-type
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
Znf_CCCH	Pfam	Zinc finger, CCCH-type

GOSlim

13 results

GO Term	Annotation Origin	Type
nucleic acid binding	Blast	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Blast	cellular component
nucleolus	Blast	cellular component
cytosol	Blast	cellular component
zinc ion binding	Blast	molecular function
macromolecular complex	Blast	cellular component
metal ion binding	Orthology	molecular function
regulation of gene expression	Orthology	biological process
RNA processing	Orthology	biological process
negative regulation of gene expression	Orthology	biological process

GO (Orthology)

8 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
posttranscriptional regulation of gene expression	Hs	biological process
viral process	Hs	biological process
production of miRNAs involved in gene silencing by miRNA	Hs	biological process
miRNA binding	Hs	molecular function
metal ion binding	Hs	molecular function

GO (Blast)

11 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	110	7.17e-26
RNA binding	Hs	molecular function	406	2.36e-123
protein binding	Hs	molecular function	406	2.36e-123
nucleus	Hs	cellular component	406	2.36e-123
nucleoplasm	Hs	cellular component	110	7.17e-26
nucleolus	Hs	cellular component	110	7.17e-26
cytosol	Hs	cellular component	110	7.17e-26
zinc ion binding	Hs	molecular function	110	7.17e-26
macromolecular complex	Hs	cellular component	110	7.17e-26
miRNA binding	Hs	molecular function	406	2.36e-123
metal ion binding	Hs	molecular function	406	2.36e-123

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
nucleic acid binding	SUPERFAMILY	molecular function	1.15E-31
metal ion binding	SUPERFAMILY	molecular function	4.58E-6