Aniseed - Gene card

Gene Card

Best human hits

GPSM2; RAPSN; TTC28

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005263

Gene Model ID

KH2012:KH.C3.110

Location

KhC3:3070464..3074410

Transcript Models and Sequences

KH2012:KH.C3.110.v1.A.nonSL4-1
KH2012:KH.C3.110.v1.A.SL1-1
KH2012:KH.C3.110.v1.A.SL2-1
KH2012:KH.C3.110.v1.A.SL3-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000012734
NCBI Reference Sequence	NM_001078468.1
NCBI Reference Sequence	XM_018817840.1

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term	Analysis	Definition
Znf_RING	SMART	Zinc finger, RING-type
TPR-like_helical_dom_sf	SUPERFAMILY	Tetratricopeptide-like helical domain superfamily
Znf_RING	Pfam	Zinc finger, RING-type
Znf_RING	ProSiteProfiles	Zinc finger, RING-type
Rapsyn_myristoylation/link_N	Pfam	Rapsyn, myristoylation/linker region, N-terminal
TPR-like_helical_dom_sf	Gene3D	Tetratricopeptide-like helical domain superfamily
Apc5_dom	Pfam	Anaphase-promoting complex subunit 5 domain
TPR_repeat	SMART	Tetratricopeptide repeat
Znf_RING/FYVE/PHD	Gene3D	Zinc finger, RING/FYVE/PHD-type

GOSlim

32 results

GO Term	Annotation Origin	Type
nucleotide binding	Blast	molecular function
protein binding	Blast	molecular function
cytoplasm	Blast	cellular component
Golgi apparatus	Blast	cellular component
centrosome	Blast	cellular component
microtubule organizing center	Blast	cellular component
cytosol	Blast	cellular component
cytoskeleton	Blast	cellular component
plasma membrane	Blast	cellular component
chemical synaptic transmission	InterProScan	biological process
protein C-terminus binding	Blast	molecular function
membrane	Blast	cellular component
kinase binding	Blast	molecular function
cell junction	Blast	cellular component
midbody	Blast	cellular component
GTPase regulator activity	Blast	molecular function
macromolecular complex	Blast	cellular component
identical protein binding	Blast	molecular function
synapse	Blast	cellular component
postsynaptic membrane	Blast	cellular component
metal ion binding	Blast	molecular function
cytoskeletal part	Blast	cellular component
microtubule cytoskeleton	Blast	cellular component
guanyl ribonucleotide binding	Blast	molecular function
anion binding	Blast	molecular function
purine ribonucleoside binding	Blast	molecular function
cell periphery	Blast	cellular component
cytoplasmic part	Blast	cellular component
plasma membrane part	Blast	cellular component
receptor binding	Blast	molecular function
macromolecular complex binding	Blast	molecular function
organelle part	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

37 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	50.1	2.06e-06
spindle pole	Hs	cellular component	54.7	1.05e-07
G-protein alpha-subunit binding	Hs	molecular function	50.1	2.06e-06
GDP-dissociation inhibitor activity	Hs	molecular function	50.1	2.06e-06
protein binding	Hs	molecular function	281	9.82e-91
cytoplasm	Hs	cellular component	281	9.82e-91
Golgi apparatus	Hs	cellular component	281	9.82e-91
centrosome	Hs	cellular component	281	9.82e-91
microtubule organizing center	Hs	cellular component	54.7	1.05e-07
spindle	Hs	cellular component	54.7	1.05e-07
cytosol	Hs	cellular component	281	9.82e-91
cytoskeleton	Hs	cellular component	281	9.82e-91
plasma membrane	Hs	cellular component	281	9.82e-91
cell cortex	Hs	cellular component	50.1	2.06e-06
protein C-terminus binding	Hs	molecular function	50.1	2.06e-06
membrane	Hs	cellular component	281	9.82e-91
lateral plasma membrane	Hs	cellular component	50.1	2.06e-06
kinase binding	Hs	molecular function	54.7	1.05e-07
protein domain specific binding	Hs	molecular function	50.1	2.06e-06
cell junction	Hs	cellular component	281	9.82e-91
midbody	Hs	cellular component	54.7	1.05e-07
GTPase regulator activity	Hs	molecular function	50.1	2.06e-06
neuromuscular junction	Hs	cellular component	281	9.82e-91
macromolecular complex	Hs	cellular component	50.1	2.06e-06
acetylcholine receptor binding	Hs	molecular function	281	9.82e-91
ionotropic glutamate receptor binding	Hs	molecular function	281	9.82e-91
identical protein binding	Hs	molecular function	50.1	2.06e-06
protein membrane anchor	Hs	molecular function	281	9.82e-91
protein self-association	Hs	molecular function	50.1	2.06e-06
synapse	Hs	cellular component	281	9.82e-91
postsynaptic membrane	Hs	cellular component	281	9.82e-91
metal ion binding	Hs	molecular function	281	9.82e-91
dynein complex binding	Hs	molecular function	50.1	2.06e-06
mitotic spindle pole	Hs	cellular component	50.1	2.06e-06
lateral cell cortex	Hs	cellular component	50.1	2.06e-06
postsynaptic specialization membrane	Hs	cellular component	281	9.82e-91
cell cortex region	Hs	cellular component	50.1	2.06e-06

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
protein binding	Gene3D	molecular function	9.1E-16
chemical synaptic transmission	Pfam	biological process	2.1E-7
acetylcholine receptor binding	Pfam	molecular function	2.1E-7
protein membrane anchor	Pfam	molecular function	2.1E-7