Gene Card
Best human hits
MESP2; MSGN1; PTF1A
Unique Gene ID
Cirobu.g00005252
Gene Model ID
KH2012:KH.C3.100
Location
KhC3:3535900..3537234
Transcript Models and Sequences
KH2012:KH.C3.100.v1.A.nonSL2-1
KH2012:KH.C3.100.v1.A.nonSL4-1
KH2012:KH.C3.100.v1.R.nonSL1-1
KH2012:KH.C3.100.v1.R.nonSL3-1
External database links
2 results
| Database | Gene ID |
|---|---|
| ENSEMBL | ENSCING00000012702 |
| NCBI Reference Sequence | NM_001078293.1 |
Gene collection 1 (N. Satoh)
1 result
cicl045n09
Plate: R1CiGC13m15
Regulatory Regions
14 results
- Ci-Mesp -150bp/39bp REG00000643 [ regulatory_region (extended_promoter) ]
- Ci-Mesp -138/39 REG00000211 [ regulatory_region (extended_promoter) ]
- Ci-Mesp -150bp/39bp Lhx3-1 mutated REG00000644 [ regulatory_region (extended_promoter) ]
- Ci-Mesp -150bp/39bp Lhx3-2 mutated REG00000645 [ regulatory_region (extended_promoter) ]
- Ci-Mesp -150bp/39bp Lhx3-3 mutated REG00000646 [ regulatory_region (extended_promoter) ]
- Ci-Mesp -150bp/39bp Lhx3-4/5 mutated REG00000647 [ regulatory_region (extended_promoter) ]
- Ci-Mesp -150bp/39bp Lhx3-6 mutated REG00000648 [ regulatory_region (extended_promoter) ]
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The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
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You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
6 results
| IPR Term | Analysis | Definition |
|---|---|---|
| bHLH_dom | Pfam | Myc-type, basic helix-loop-helix (bHLH) domain |
| HLH_DNA-bd_sf | Gene3D | Helix-loop-helix DNA-binding domain superfamily |
| bHLH_dom | CDD | Myc-type, basic helix-loop-helix (bHLH) domain |
| bHLH_dom | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain |
| HLH_DNA-bd_sf | SUPERFAMILY | Helix-loop-helix DNA-binding domain superfamily |
| bHLH_dom | SMART | Myc-type, basic helix-loop-helix (bHLH) domain |
GOSlim
14 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| RNA polymerase II core promoter proximal region sequence-specific DNA binding | Blast | molecular function |
| RNA polymerase II transcription factor activity, sequence-specific DNA binding | Blast | molecular function |
| transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | Blast | molecular function |
| DNA binding | Blast | molecular function |
| chromatin binding | Blast | molecular function |
| intracellular | Blast | cellular component |
| nucleus | Blast | cellular component |
| cytoplasm | Blast | cellular component |
| sequence-specific DNA binding | Blast | molecular function |
| protein dimerization activity | Blast | molecular function |
| extracellular exosome | Blast | cellular component |
| RNA polymerase II regulatory region sequence-specific DNA binding | Blast | molecular function |
| intracellular part | Blast | cellular component |
| macromolecular complex | Blast | cellular component |
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|
GO (Blast)
15 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| RNA polymerase II core promoter proximal region sequence-specific DNA binding | Hs | molecular function | 52.8 | 9.37e-09 |
| RNA polymerase II distal enhancer sequence-specific DNA binding | Hs | molecular function | 45.1 | 7.53e-06 |
| RNA polymerase II transcription factor activity, sequence-specific DNA binding | Hs | molecular function | 52.8 | 9.37e-09 |
| transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding | Hs | molecular function | 52.8 | 9.37e-09 |
| transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | Hs | molecular function | 52.8 | 9.37e-09 |
| DNA binding | Hs | molecular function | 52.8 | 9.37e-09 |
| chromatin binding | Hs | molecular function | 52.8 | 9.37e-09 |
| intracellular | Hs | cellular component | 45.1 | 7.53e-06 |
| nucleus | Hs | cellular component | 52.8 | 9.37e-09 |
| transcription factor complex | Hs | cellular component | 45.1 | 7.53e-06 |
| cytoplasm | Hs | cellular component | 45.1 | 7.53e-06 |
| sequence-specific DNA binding | Hs | molecular function | 45.1 | 7.53e-06 |
| protein dimerization activity | Hs | molecular function | 52.8 | 9.37e-09 |
| extracellular exosome | Hs | cellular component | 46.6 | 3.10e-06 |
| E-box binding | Hs | molecular function | 45.1 | 7.53e-06 |
GO (InterProScan)
1 result
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| protein dimerization activity | Gene3D | molecular function | 2.3E-15 |
