Aniseed - Gene card

Gene Card

Best human hits

PARVA; PARVB; PARVG

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005217

Gene Model ID

KH2012:KH.C2.97

Location

KhC2:7538096..7545903

Transcript Models and Sequences

KH2012:KH.C2.97.v1.A.nonSL3-1
KH2012:KH.C2.97.v1.A.nonSL4-1
KH2012:KH.C2.97.v1.A.nonSL7-1
KH2012:KH.C2.97.v1.A.nonSL8-1
KH2012:KH.C2.97.v1.A.nonSL9-1
KH2012:KH.C2.97.v1.A.SL1-1
KH2012:KH.C2.97.v1.A.SL2-1
KH2012:KH.C2.97.v1.A.SL5-1
KH2012:KH.C2.97.v1.A.SL6-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000004997
NCBI Reference Sequence	XM_002123494.4
NCBI Reference Sequence	XM_018817449.1

Collections

Gateway full ORF

3 results

Gene collection 1 (N. Satoh)

2 results

cieg027g16

Plate: R1CiGC19p12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
CH-domain	ProSiteProfiles	Calponin homology domain
CH-domain	Pfam	Calponin homology domain
CH_dom_sf	Gene3D	CH domain superfamily
Parvin	PANTHER	Parvin
CH_dom_sf	SUPERFAMILY	CH domain superfamily
Parvin	PIRSF	Parvin

GOSlim

21 results

GO Term	Annotation Origin	Type
actin binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
cytoskeleton	Orthology	cellular component
plasma membrane	Orthology	cellular component
focal adhesion	Orthology	cellular component
cell adhesion	Orthology	biological process
membrane	Orthology	cellular component
lamellipodium	Orthology	cellular component
cell projection assembly	Orthology	biological process
cell junction	Orthology	cellular component
cell projection	Orthology	cellular component
angiogenesis	Orthology	biological process
cellular process	Orthology	biological process
cytoplasmic part	Orthology	cellular component
organelle part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
organelle organization	Orthology	biological process
cell morphogenesis involved in differentiation	Orthology	biological process

GO (Orthology)

23 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
sprouting angiogenesis	Hs	biological process
actin binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
cytoskeleton	Hs	cellular component
plasma membrane	Hs	cellular component
focal adhesion	Hs	cellular component
cell adhesion	Hs	biological process
establishment or maintenance of cell polarity	Hs	biological process
actin cytoskeleton	Hs	cellular component
membrane	Hs	cellular component
sarcomere	Hs	cellular component
Z disc	Hs	cellular component
lamellipodium	Hs	cellular component
cell projection assembly	Hs	biological process
lamellipodium assembly	Hs	biological process
cell junction	Hs	cellular component
actin cytoskeleton reorganization	Hs	biological process
substrate adhesion-dependent cell spreading	Hs	biological process
cell projection	Hs	cellular component
actin-mediated cell contraction	Hs	biological process

GO (Blast)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
actin binding	Hs	molecular function	398	2.42e-138
protein binding	Hs	molecular function	398	2.42e-138
nucleus	Hs	cellular component	392	5.02e-136
cytoplasm	Hs	cellular component	398	2.42e-138
cytosol	Hs	cellular component	398	2.42e-138
cytoskeleton	Hs	cellular component	398	2.42e-138
plasma membrane	Hs	cellular component	398	2.42e-138
focal adhesion	Hs	cellular component	398	2.42e-138
actin cytoskeleton	Hs	cellular component	392	5.02e-136
membrane	Hs	cellular component	398	2.42e-138
sarcomere	Hs	cellular component	398	2.42e-138
Z disc	Hs	cellular component	398	2.42e-138
lamellipodium	Hs	cellular component	398	2.42e-138
cell junction	Hs	cellular component	398	2.42e-138
cell projection	Hs	cellular component	398	2.42e-138

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
actin binding	PANTHER	molecular function	3.6E-150
protein binding	Pfam	molecular function	3.0E-13
cell adhesion	PANTHER	biological process	3.6E-150
actin cytoskeleton reorganization	PANTHER	biological process	3.6E-150