Aniseed - Gene card

Gene 'KH2012:KH.C2.90'

Gene Card

Best human hits

TRAM1; TRAM1L1; TRAM2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00005142

Gene Model ID

KH2012:KH.C2.90

Location

KhC2:6886644..6891088

Transcript Models and Sequences

KH2012:KH.C2.90.v1.A.SL1-1
KH2012:KH.C2.90.v2.A.SL1-2

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000006806
NCBI Reference Sequence	NM_001032660.1

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

2 results

cilv059m20

Plate: R1CiGC44k24

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
TRAM1	Pfam	TRAM1-like protein
Translocation_assoc_membrane	PIRSF	Translocation associated membrane protein
TLC-dom	Pfam	TRAM/LAG1/CLN8 homology domain
TLC-dom	SMART	TRAM/LAG1/CLN8 homology domain

GOSlim

12 results

GO Term	Annotation Origin	Type
protein binding	Orthology	molecular function
endoplasmic reticulum	Orthology	cellular component
endoplasmic reticulum membrane	Orthology	cellular component
cotranslational protein targeting to membrane	Orthology	biological process
protein transport	Orthology	biological process
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
biosynthetic process	Orthology	biological process
membrane organization	Orthology	biological process
organelle organization	Orthology	biological process
establishment of protein localization to membrane	Orthology	biological process
protein localization to organelle	Orthology	biological process

GO (Orthology)

11 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
receptor activity	Hs	molecular function
protein binding	Hs	molecular function
endoplasmic reticulum	Hs	cellular component
endoplasmic reticulum membrane	Hs	cellular component
cotranslational protein targeting to membrane	Hs	biological process
protein transport	Hs	biological process
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
viral process	Hs	biological process
collagen biosynthetic process	Hs	biological process
protein insertion into ER membrane	Hs	biological process

GO (Blast)

6 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
receptor activity	Hs	molecular function	288	6.85e-95
protein binding	Hs	molecular function	288	6.85e-95
endoplasmic reticulum	Hs	cellular component	288	6.85e-95
endoplasmic reticulum membrane	Hs	cellular component	288	6.85e-95
membrane	Hs	cellular component	288	6.85e-95
integral component of membrane	Hs	cellular component	288	6.85e-95

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
integral component of membrane	Pfam	cellular component	1.8E-21