Aniseed - Gene card

Gene Card

Best human hits

USP22; USP27X; USP51

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004943

Gene Model ID

KH2012:KH.C2.719

Location

KhC2:4759829..4765488

Transcript Models and Sequences

KH2012:KH.C2.719.v1.A.ND1-1
KH2012:KH.C2.719.v1.A.nonSL2-1
KH2012:KH.C2.719.v1.A.SL3-1
KH2012:KH.C2.719.v1.A.SL4-1
KH2012:KH.C2.719.v1.A.SL5-1
KH2012:KH.C2.719.v2.A.ND1-2
KH2012:KH.C2.719.v2.A.nonSL2-2
KH2012:KH.C2.719.v2.A.SL3-2
KH2012:KH.C2.719.v2.A.SL4-2
KH2012:KH.C2.719.v2.A.SL5-2

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000006364

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg046o06

Plate: R1CiGC23g09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
Znf_RING/FYVE/PHD	Gene3D	Zinc finger, RING/FYVE/PHD-type
Znf_UBP	Pfam	Zinc finger, UBP-type
USP51	PANTHER	Ubiquitin-specific peptidase 51
Znf_UBP	ProSiteProfiles	Zinc finger, UBP-type
Peptidase_C19_UCH	Pfam	Peptidase C19, ubiquitin carboxyl-terminal hydrolase
USP_dom	ProSiteProfiles	Ubiquitin specific protease domain
USP_CS	ProSitePatterns	Ubiquitin specific protease, conserved site

GOSlim

30 results

GO Term	Annotation Origin	Type
chromatin binding	Orthology	molecular function
transcription coactivator activity	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
DNA repair	Orthology	biological process
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
proteolysis	Orthology	biological process
cellular response to DNA damage stimulus	Orthology	biological process
cell cycle	Orthology	biological process
peptidase activity	Orthology	molecular function
zinc ion binding	Orthology	molecular function
nuclear speck	Orthology	cellular component
hydrolase activity	Orthology	molecular function
enzyme binding	Orthology	molecular function
positive regulation of apoptotic process	Orthology	biological process
positive regulation of transcription, DNA-templated	Orthology	biological process
metal ion binding	Orthology	molecular function
nucleoplasm part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
peptidase activity, acting on L-amino acid peptides	Orthology	molecular function
intracellular non-membrane-bounded organelle	Orthology	cellular component
organelle organization	Orthology	biological process
multicellular organism development	Orthology	biological process
transferase activity	Orthology	molecular function
cellular protein modification process	Orthology	biological process
protein ubiquitination	Orthology	biological process

GO (Orthology)

46 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
SAGA complex	Hs	cellular component
chromatin binding	Hs	molecular function
transcription coactivator activity	Hs	molecular function
thiol-dependent ubiquitin-specific protease activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
chromosome	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
DNA repair	Hs	biological process
chromatin organization	Hs	biological process
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
proteolysis	Hs	biological process
ubiquitin-dependent protein catabolic process	Hs	biological process
cellular response to DNA damage stimulus	Hs	biological process
cell cycle	Hs	biological process
peptidase activity	Hs	molecular function
cysteine-type peptidase activity	Hs	molecular function
zinc ion binding	Hs	molecular function
embryo development ending in birth or egg hatching	Hs	biological process
H4 histone acetyltransferase activity	Hs	molecular function
regulation of cell cycle process	Hs	biological process
regulation of double-strand break repair via homologous recombination	Hs	biological process
histone ubiquitination	Hs	biological process
histone deubiquitination	Hs	biological process
protein deubiquitination	Hs	biological process
nuclear speck	Hs	cellular component
hydrolase activity	Hs	molecular function
enzyme binding	Hs	molecular function
ligand-dependent nuclear receptor transcription coactivator activity	Hs	molecular function
thiol-dependent ubiquitinyl hydrolase activity	Hs	molecular function
histone binding	Hs	molecular function
positive regulation of apoptotic process	Hs	biological process
histone H4 acetylation	Hs	biological process
positive regulation of transcription, DNA-templated	Hs	biological process
positive regulation of mitotic cell cycle	Hs	biological process
metal ion binding	Hs	molecular function
protein stabilization	Hs	biological process
Lys63-specific deubiquitinase activity	Hs	molecular function
SAGA-type complex	Hs	cellular component
protein K63-linked deubiquitination	Hs	biological process
protein K48-linked deubiquitination	Hs	biological process
Lys48-specific deubiquitinase activity	Hs	molecular function
regulation of response to DNA damage stimulus	Hs	biological process

GO (Blast)

24 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
SAGA complex	Hs	cellular component	507	1.82e-177
chromatin binding	Hs	molecular function	426	4.48e-143
transcription coactivator activity	Hs	molecular function	507	1.82e-177
thiol-dependent ubiquitin-specific protease activity	Hs	molecular function	507	1.82e-177
protein binding	Hs	molecular function	507	1.82e-177
nucleus	Hs	cellular component	507	1.82e-177
nucleoplasm	Hs	cellular component	507	1.82e-177
chromosome	Hs	cellular component	426	4.48e-143
cytoplasm	Hs	cellular component	397	3.03e-135
cytosol	Hs	cellular component	397	3.03e-135
peptidase activity	Hs	molecular function	507	1.82e-177
cysteine-type peptidase activity	Hs	molecular function	507	1.82e-177
zinc ion binding	Hs	molecular function	507	1.82e-177
H4 histone acetyltransferase activity	Hs	molecular function	507	1.82e-177
nuclear speck	Hs	cellular component	507	1.82e-177
hydrolase activity	Hs	molecular function	507	1.82e-177
enzyme binding	Hs	molecular function	507	1.82e-177
ligand-dependent nuclear receptor transcription coactivator activity	Hs	molecular function	507	1.82e-177
thiol-dependent ubiquitinyl hydrolase activity	Hs	molecular function	507	1.82e-177
histone binding	Hs	molecular function	426	4.48e-143
metal ion binding	Hs	molecular function	507	1.82e-177
Lys63-specific deubiquitinase activity	Hs	molecular function	397	3.03e-135
SAGA-type complex	Hs	cellular component	507	1.82e-177
Lys48-specific deubiquitinase activity	Hs	molecular function	397	3.03e-135

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
ubiquitin-dependent protein catabolic process	ProSitePatterns	biological process
zinc ion binding	Pfam	molecular function	1.0E-16
protein deubiquitination	PANTHER	biological process	5.4E-35
thiol-dependent ubiquitinyl hydrolase activity	PANTHER	molecular function	5.4E-35