Aniseed - Gene card

Gene Card

Best human hits

DCAF13; KATNB1; POC1B

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004938

Gene Model ID

KH2012:KH.C2.714

Location

KhC2:2629456..2634368

Transcript Models and Sequences

KH2012:KH.C2.714.v1.A.nonSL4-1
KH2012:KH.C2.714.v1.A.nonSL5-1
KH2012:KH.C2.714.v1.A.nonSL6-1
KH2012:KH.C2.714.v1.A.nonSL7-1
KH2012:KH.C2.714.v1.A.SL1-1
KH2012:KH.C2.714.v2.A.SL2-2
KH2012:KH.C2.714.v3.A.nonSL4-2
KH2012:KH.C2.714.v3.A.nonSL5-2
KH2012:KH.C2.714.v3.A.nonSL6-2
KH2012:KH.C2.714.v3.A.nonSL7-2
KH2012:KH.C2.714.v3.A.SL1-2
KH2012:KH.C2.714.v4.A.ND3-1
KH2012:KH.C2.714.v5.A.SL2-1

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000005282
NCBI Reference Sequence	XM_002121534.4
NCBI Reference Sequence	XM_009859302.2
NCBI Reference Sequence	XM_018817737.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

ciad034e15

Plate: R1CiGC03n24

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
WD40_repeat	ProSiteProfiles	WD40 repeat
WD40_repeat	Pfam	WD40 repeat
WD40_repeat	SMART	WD40 repeat
WD40/YVTN_repeat-like_dom_sf	Gene3D	WD40/YVTN repeat-like-containing domain superfamily
WD40_repeat_dom_sf	SUPERFAMILY	WD40-repeat-containing domain superfamily
Sof1	Pfam	Sof1-like protein
WD40_repeat_dom	ProSiteProfiles	WD40-repeat-containing domain

GOSlim

36 results

GO Term	Annotation Origin	Type
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Blast	cellular component
centrosome	Orthology	cellular component
microtubule organizing center	Blast	cellular component
cytosol	Orthology	cellular component
cytoskeleton	Blast	cellular component
microtubule	Blast	cellular component
plasma membrane	Blast	cellular component
microtubule binding	Blast	molecular function
microtubule cytoskeleton	Blast	cellular component
membrane	Blast	cellular component
protein ubiquitination	Orthology	biological process
cell junction	Orthology	cellular component
axon	Blast	cellular component
midbody	Blast	cellular component
cell projection	Blast	cellular component
neuronal cell body	Blast	cellular component
protein heterodimerization activity	Blast	molecular function
RNA processing	Orthology	biological process
receptor binding	Orthology	molecular function
transcription factor binding	Orthology	molecular function
macromolecular complex	Orthology	cellular component
cellular protein modification process	Orthology	biological process
intracellular part	Orthology	cellular component
cytoskeletal part	Blast	cellular component
cytoplasmic part	Blast	cellular component
microtubule-based process	Blast	biological process
organelle organization	Blast	biological process
nucleoside-triphosphatase activity	Blast	molecular function
cell projection part	Blast	cellular component
plasma membrane region	Blast	cellular component
macromolecular complex binding	Blast	molecular function

GO (Orthology)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Hs	biological process
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
centrosome	Hs	cellular component
cytosol	Hs	cellular component
rRNA processing	Hs	biological process
protein ubiquitination	Hs	biological process
cell junction	Hs	cellular component
estrogen receptor binding	Hs	molecular function
intracellular ribonucleoprotein complex	Hs	cellular component
small-subunit processome	Hs	cellular component
ribosome biogenesis	Hs	biological process
post-translational protein modification	Hs	biological process
Cul4-RING E3 ubiquitin ligase complex	Hs	cellular component

GO (Blast)

33 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
spindle pole	Hs	cellular component	71.2	3.77e-13
RNA binding	Hs	molecular function	587	0.0
protein binding	Hs	molecular function	587	0.0
nucleus	Hs	cellular component	587	0.0
nucleoplasm	Hs	cellular component	587	0.0
nucleolus	Hs	cellular component	587	0.0
cytoplasm	Hs	cellular component	71.2	3.77e-13
centrosome	Hs	cellular component	587	0.0
centriole	Hs	cellular component	70.5	5.57e-13
microtubule organizing center	Hs	cellular component	71.2	3.77e-13
spindle	Hs	cellular component	71.2	3.77e-13
cytosol	Hs	cellular component	587	0.0
cytoskeleton	Hs	cellular component	71.2	3.77e-13
microtubule	Hs	cellular component	71.2	3.77e-13
plasma membrane	Hs	cellular component	71.2	3.77e-13
microtubule binding	Hs	molecular function	71.2	3.77e-13
katanin complex	Hs	cellular component	71.2	3.77e-13
microtubule-severing ATPase activity	Hs	molecular function	71.2	3.77e-13
microtubule cytoskeleton	Hs	cellular component	71.2	3.77e-13
membrane	Hs	cellular component	71.2	3.77e-13
cell junction	Hs	cellular component	587	0.0
estrogen receptor binding	Hs	molecular function	587	0.0
axon	Hs	cellular component	71.2	3.77e-13
growth cone	Hs	cellular component	71.2	3.77e-13
midbody	Hs	cellular component	71.2	3.77e-13
intracellular ribonucleoprotein complex	Hs	cellular component	587	0.0
small-subunit processome	Hs	cellular component	587	0.0
ciliary basal body	Hs	cellular component	70.5	5.57e-13
cell projection	Hs	cellular component	70.5	5.57e-13
neuronal cell body	Hs	cellular component	71.2	3.77e-13
protein heterodimerization activity	Hs	molecular function	71.2	3.77e-13
dynein complex binding	Hs	molecular function	71.2	3.77e-13
Cul4-RING E3 ubiquitin ligase complex	Hs	cellular component	587	0.0

GO (InterProScan)