Aniseed - Gene card

Gene 'KH2012:KH.C2.659'

Gene Card

Best human hits

CNBP; ZCCHC13; ZCCHC7

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004879

Gene Model ID

KH2012:KH.C2.659

Location

KhC2:2702147..2704300

Transcript Models and Sequences

KH2012:KH.C2.659.v1.A.SL1-1
KH2012:KH.C2.659.v1.A.SL2-1

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000024203

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

2 results

cieg032j18

Plate: R1CiGC20h20

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
Znf_CCHC_sf	SUPERFAMILY	Zinc finger, CCHC-type superfamily
Znf_CCHC	ProSiteProfiles	Zinc finger, CCHC-type
Znf_CCHC	SMART	Zinc finger, CCHC-type
Znf_CCHC	Pfam	Zinc finger, CCHC-type

GOSlim

15 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Blast	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Blast	molecular function
nucleic acid binding	Orthology	molecular function
DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Blast	cellular component
endoplasmic reticulum	Blast	cellular component
cytosol	Orthology	cellular component
zinc ion binding	Orthology	molecular function
metal ion binding	Orthology	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function

GO (Orthology)

8 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleolus	Hs	cellular component
cytosol	Hs	cellular component
zinc ion binding	Hs	molecular function
metal ion binding	Hs	molecular function

GO (Blast)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	50.8	2.14e-07
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	50.8	2.14e-07
nucleic acid binding	Hs	molecular function	106	1.05e-24
DNA binding	Hs	molecular function	50.8	2.14e-07
single-stranded DNA binding	Hs	molecular function	50.8	2.14e-07
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	50.8	2.14e-07
RNA binding	Hs	molecular function	106	1.05e-24
single-stranded RNA binding	Hs	molecular function	50.8	2.14e-07
protein binding	Hs	molecular function	106	1.05e-24
nucleus	Hs	cellular component	106	1.05e-24
nucleolus	Hs	cellular component	106	1.05e-24
cytoplasm	Hs	cellular component	50.8	2.14e-07
endoplasmic reticulum	Hs	cellular component	50.8	2.14e-07
cytosol	Hs	cellular component	106	1.05e-24
zinc ion binding	Hs	molecular function	106	1.05e-24
metal ion binding	Hs	molecular function	106	1.05e-24

GO (InterProScan)