Aniseed - Gene card

Gene Card

Best human hits

PSMD10; ZDHHC13; ZDHHC17

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004627

Gene Model ID

KH2012:KH.C2.43

Location

KhC2:2183561..2187246

Transcript Models and Sequences

KH2012:KH.C2.43.v1.A.SL1-2
KH2012:KH.C2.43.v1.A.SL2-2
KH2012:KH.C2.43.v1.A.SL3-2
KH2012:KH.C2.43.v2.A.SL1-1
KH2012:KH.C2.43.v2.A.SL2-1
KH2012:KH.C2.43.v2.A.SL3-1
KH2012:KH.C2.43.v3.A.SL1-1
KH2012:KH.C2.43.v3.A.SL2-1
KH2012:KH.C2.43.v3.A.SL3-1
KH2012:KH.C2.43.v4.A.SL1-1
KH2012:KH.C2.43.v4.A.SL2-1
KH2012:KH.C2.43.v4.A.SL3-1

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000004876

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

3 results

cign073o16

Plate: R1CiGC42p16

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
Ankyrin_rpt-contain_dom	Pfam	Ankyrin repeat-containing domain
Ankyrin_rpt	ProSiteProfiles	Ankyrin repeat
Ankyrin_rpt-contain_sf	Gene3D	Ankyrin repeat-containing domain superfamily
Ankyrin_rpt-contain_sf	SUPERFAMILY	Ankyrin repeat-containing domain superfamily
Ankyrin_rpt-contain_dom	ProSiteProfiles	Ankyrin repeat-containing domain
Ankyrin_rpt-contain_dom	CDD	Ankyrin repeat-containing domain
Ankyrin_rpt	SMART	Ankyrin repeat
Palmitoyltrfase_DHHC	Pfam	Palmitoyltransferase, DHHC domain

GOSlim

30 results

GO Term	Annotation Origin	Type
Golgi membrane	Blast	cellular component
signal transducer activity	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Blast	cellular component
endoplasmic reticulum	Blast	cellular component
Golgi apparatus	Blast	cellular component
cytosol	Blast	cellular component
plasma membrane	Blast	cellular component
transcription factor binding	Blast	molecular function
membrane	Blast	cellular component
integral component of membrane	Blast	cellular component
transferase activity	Blast	molecular function
cell junction	Blast	cellular component
cytoplasmic vesicle	Blast	cellular component
identical protein binding	Blast	molecular function
intracellular membrane-bounded organelle	Blast	cellular component
synapse	Blast	cellular component
transmembrane transport	Blast	biological process
intracellular part	Blast	cellular component
macromolecular complex	Blast	cellular component
metal ion transport	Blast	biological process
intracellular organelle part	Blast	cellular component
organelle membrane	Blast	cellular component
whole membrane	Blast	cellular component
bounding membrane of organelle	Blast	cellular component
synaptic membrane	Blast	cellular component
neuron part	Blast	cellular component
cytoskeleton	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

31 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
Golgi membrane	Hs	cellular component	190	5.86e-53
proteasome complex	Hs	cellular component	101	2.50e-24
signal transducer activity	Hs	molecular function	190	5.86e-53
protein binding	Hs	molecular function	190	5.86e-53
nucleus	Hs	cellular component	101	2.50e-24
nucleoplasm	Hs	cellular component	101	2.50e-24
cytoplasm	Hs	cellular component	101	2.50e-24
endoplasmic reticulum	Hs	cellular component	107	1.63e-24
Golgi apparatus	Hs	cellular component	190	5.86e-53
cytosol	Hs	cellular component	101	2.50e-24
proteasome regulatory particle	Hs	cellular component	101	2.50e-24
plasma membrane	Hs	cellular component	190	5.86e-53
transcription factor binding	Hs	molecular function	101	2.50e-24
proteasome regulatory particle, base subcomplex	Hs	cellular component	101	2.50e-24
magnesium ion transmembrane transporter activity	Hs	molecular function	190	5.86e-53
membrane	Hs	cellular component	190	5.86e-53
integral component of membrane	Hs	cellular component	190	5.86e-53
aggresome	Hs	cellular component	190	5.86e-53
palmitoyltransferase activity	Hs	molecular function	190	5.86e-53
transferase activity	Hs	molecular function	190	5.86e-53
transferase activity, transferring acyl groups	Hs	molecular function	190	5.86e-53
protein-cysteine S-palmitoyltransferase activity	Hs	molecular function	190	5.86e-53
cell junction	Hs	cellular component	190	5.86e-53
cytoplasmic vesicle membrane	Hs	cellular component	190	5.86e-53
Golgi-associated vesicle membrane	Hs	cellular component	190	5.86e-53
cytoplasmic vesicle	Hs	cellular component	190	5.86e-53
presynaptic membrane	Hs	cellular component	190	5.86e-53
identical protein binding	Hs	molecular function	190	5.86e-53
intracellular membrane-bounded organelle	Hs	cellular component	190	5.86e-53
intermediate filament cytoskeleton	Hs	cellular component	101	2.50e-24
synapse	Hs	cellular component	190	5.86e-53

GO (InterProScan)