Aniseed - Gene card

Gene Card

Best human hits

MRPL44

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004300

Gene Model ID

KH2012:KH.C2.13

Location

KhC2:490110..492158

Transcript Models and Sequences

KH2012:KH.C2.13.v1.A.SL1-1
KH2012:KH.C2.13.v2.A.nonSL3-1
KH2012:KH.C2.13.v2.A.nonSL4-1
KH2012:KH.C2.13.v2.A.nonSL5-1
KH2012:KH.C2.13.v2.R.ND2-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000015058
NCBI Reference Sequence	XM_002131374.4
NCBI Reference Sequence	XM_018817393.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg046k12

Plate: R1CiGC23e11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
RNase_III_sf	Gene3D	Ribonuclease III, endonuclease domain superfamily
RNase_III_sf	SUPERFAMILY	Ribonuclease III, endonuclease domain superfamily
RNase_III_dom	ProSiteProfiles	Ribonuclease III domain

GOSlim

11 results

GO Term	Annotation Origin	Type
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
mitochondrion	Orthology	cellular component
mitochondrial inner membrane	Orthology	cellular component
ribosome	Orthology	cellular component
plasma membrane	Orthology	cellular component
RNA processing	Orthology	biological process
hydrolase activity	Orthology	molecular function
RNA metabolic process	Orthology	biological process
mitochondrial matrix	Orthology	cellular component

GO (Orthology)

19 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA binding	Hs	molecular function
double-stranded RNA binding	Hs	molecular function
nuclease activity	Hs	molecular function
endonuclease activity	Hs	molecular function
ribonuclease III activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
mitochondrion	Hs	cellular component
mitochondrial inner membrane	Hs	cellular component
mitochondrial large ribosomal subunit	Hs	cellular component
ribosome	Hs	cellular component
plasma membrane	Hs	cellular component
RNA processing	Hs	biological process
hydrolase activity	Hs	molecular function
intracellular ribonucleoprotein complex	Hs	cellular component
mitochondrial translational elongation	Hs	biological process
mitochondrial translational termination	Hs	biological process
RNA phosphodiester bond hydrolysis	Hs	biological process
RNA phosphodiester bond hydrolysis, endonucleolytic	Hs	biological process

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	155	1.97e-44
double-stranded RNA binding	Hs	molecular function	155	1.97e-44
nuclease activity	Hs	molecular function	155	1.97e-44
endonuclease activity	Hs	molecular function	155	1.97e-44
ribonuclease III activity	Hs	molecular function	155	1.97e-44
protein binding	Hs	molecular function	155	1.97e-44
nucleus	Hs	cellular component	155	1.97e-44
mitochondrion	Hs	cellular component	155	1.97e-44
mitochondrial inner membrane	Hs	cellular component	155	1.97e-44
mitochondrial large ribosomal subunit	Hs	cellular component	155	1.97e-44
ribosome	Hs	cellular component	155	1.97e-44
plasma membrane	Hs	cellular component	155	1.97e-44
hydrolase activity	Hs	molecular function	155	1.97e-44
intracellular ribonucleoprotein complex	Hs	cellular component	155	1.97e-44

GO (InterProScan)