Aniseed - Gene card

Gene Card

Best human hits

ASPSCR1; UBXN6

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004219

Gene Model ID

KH2012:KH.C2.1096

Location

KhC2:5175066..5179922

Transcript Models and Sequences

KH2012:KH.C2.1096.v1.A.nonSL3-1
KH2012:KH.C2.1096.v1.A.nonSL4-1
KH2012:KH.C2.1096.v1.A.nonSL6-1
KH2012:KH.C2.1096.v1.A.nonSL7-1
KH2012:KH.C2.1096.v1.A.SL2-1
KH2012:KH.C2.1096.v1.A.SL5-1
KH2012:KH.C2.1096.v1.R.ND1-1

External Database Gene Card

External database links

2 results

Database	Gene ID
NCBI Reference Sequence	XM_002126733.4
NCBI Reference Sequence	XM_009859372.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg014a05

Plate: R1CiGC17o16

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
TUG-UBL1	Pfam	TUG ubiquitin-like domain
Ubiquitin-like_domsf	SUPERFAMILY	Ubiquitin-like domain superfamily
UBX_dom	Pfam	UBX domain

GOSlim

29 results

GO Term	Annotation Origin	Type
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
lysosome	Blast	cellular component
lysosomal membrane	Blast	cellular component
endosome	Blast	cellular component
microtubule organizing center	Blast	cellular component
cytosol	Orthology	cellular component
cytoskeleton	Blast	cellular component
plasma membrane	Orthology	cellular component
intracellular protein transport	Orthology	biological process
endomembrane system	Orthology	cellular component
membrane	Orthology	cellular component
macromolecular complex	Blast	cellular component
intracellular membrane-bounded organelle	Orthology	cellular component
perinuclear region of cytoplasm	Orthology	cellular component
extracellular exosome	Blast	cellular component
plasma membrane part	Orthology	cellular component
vesicle	Orthology	cellular component
organelle membrane	Orthology	cellular component
membrane part	Orthology	cellular component
cytoplasmic part	Orthology	cellular component
bounding membrane of organelle	Orthology	cellular component
organic substance transport	Orthology	biological process
transmembrane transport	Orthology	biological process
whole membrane	Blast	cellular component
intracellular organelle part	Blast	cellular component
early endosome	Blast	cellular component

GO (Orthology)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
plasma membrane	Hs	cellular component
intracellular protein transport	Hs	biological process
cytoplasmic side of plasma membrane	Hs	cellular component
endomembrane system	Hs	cellular component
vesicle membrane	Hs	cellular component
membrane	Hs	cellular component
extrinsic component of membrane	Hs	cellular component
endoplasmic reticulum-Golgi intermediate compartment membrane	Hs	cellular component
glucose homeostasis	Hs	biological process
intracellular membrane-bounded organelle	Hs	cellular component
regulation of glucose import	Hs	biological process
perinuclear region of cytoplasm	Hs	cellular component

GO (Blast)

23 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
protein binding	Hs	molecular function	115	2.65e-27
nucleus	Hs	cellular component	115	2.65e-27
nucleoplasm	Hs	cellular component	115	2.65e-27
cytoplasm	Hs	cellular component	115	2.65e-27
lysosome	Hs	cellular component	43.1	3.10e-04
lysosomal membrane	Hs	cellular component	43.1	3.10e-04
endosome	Hs	cellular component	43.1	3.10e-04
microtubule organizing center	Hs	cellular component	43.1	3.10e-04
cytosol	Hs	cellular component	115	2.65e-27
cytoskeleton	Hs	cellular component	43.1	3.10e-04
plasma membrane	Hs	cellular component	115	2.65e-27
cytoplasmic side of plasma membrane	Hs	cellular component	115	2.65e-27
endomembrane system	Hs	cellular component	115	2.65e-27
vesicle membrane	Hs	cellular component	115	2.65e-27
membrane	Hs	cellular component	115	2.65e-27
extrinsic component of membrane	Hs	cellular component	115	2.65e-27
early endosome membrane	Hs	cellular component	43.1	3.10e-04
late endosome membrane	Hs	cellular component	43.1	3.10e-04
macromolecular complex	Hs	cellular component	43.1	3.10e-04
endoplasmic reticulum-Golgi intermediate compartment membrane	Hs	cellular component	115	2.65e-27
intracellular membrane-bounded organelle	Hs	cellular component	115	2.65e-27
perinuclear region of cytoplasm	Hs	cellular component	115	2.65e-27
extracellular exosome	Hs	cellular component	43.1	3.10e-04

GO (InterProScan)