Aniseed - Gene card

Gene Card

Best human hits

RPN2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004208

Gene Model ID

KH2012:KH.C2.1086

Location

KhC2:5895686..5902610

Transcript Models and Sequences

KH2012:KH.C2.1086.v1.A.nonSL2-1
KH2012:KH.C2.1086.v1.A.nonSL3-1
KH2012:KH.C2.1086.v1.A.nonSL4-1
KH2012:KH.C2.1086.v1.R.ND1-1
KH2012:KH.C2.1086.v2.A.SL5-1

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000009122

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg004h20

Plate: R1CiGC16e21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

2 results

IPR Term	Analysis	Definition
Swp1	PANTHER	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Swp1
Swp1	Pfam	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit Swp1

GOSlim

11 results

GO Term	Annotation Origin	Type
protein binding	Orthology	molecular function
endoplasmic reticulum	Orthology	cellular component
endoplasmic reticulum membrane	Orthology	cellular component
cellular protein modification process	Orthology	biological process
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
vacuolar membrane	Orthology	cellular component
transferase activity	Orthology	molecular function
developmental process	Orthology	biological process
macromolecular complex	Orthology	cellular component
macromolecular complex binding	Orthology	molecular function

GO (Orthology)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
autophagosome membrane	Hs	cellular component
dolichyl-diphosphooligosaccharide-protein glycotransferase activity	Hs	molecular function
protein binding	Hs	molecular function
endoplasmic reticulum	Hs	cellular component
endoplasmic reticulum membrane	Hs	cellular component
rough endoplasmic reticulum	Hs	cellular component
cellular protein modification process	Hs	biological process
protein glycosylation	Hs	biological process
protein N-linked glycosylation	Hs	biological process
aging	Hs	biological process
oligosaccharyltransferase complex	Hs	cellular component
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
protein N-linked glycosylation via asparagine	Hs	biological process
response to drug	Hs	biological process
ribosome binding	Hs	molecular function

GO (Blast)

10 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
autophagosome membrane	Hs	cellular component	320	5.90e-101
dolichyl-diphosphooligosaccharide-protein glycotransferase activity	Hs	molecular function	320	5.90e-101
protein binding	Hs	molecular function	320	5.90e-101
endoplasmic reticulum	Hs	cellular component	320	5.90e-101
endoplasmic reticulum membrane	Hs	cellular component	320	5.90e-101
rough endoplasmic reticulum	Hs	cellular component	320	5.90e-101
oligosaccharyltransferase complex	Hs	cellular component	320	5.90e-101
membrane	Hs	cellular component	320	5.90e-101
integral component of membrane	Hs	cellular component	320	5.90e-101
ribosome binding	Hs	molecular function	320	5.90e-101

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
protein N-linked glycosylation	PANTHER	biological process	1.4E-179
oligosaccharyltransferase complex	PANTHER	cellular component	1.4E-179
integral component of membrane	PANTHER	cellular component	1.4E-179