Aniseed - Gene card

Gene 'KH2012:KH.C2.1048'

Gene Card

Best human hits

UBE4A; UBE4B; UBOX5

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004166

Gene Model ID

KH2012:KH.C2.1048

Location

KhC2:4443116..4445360

Transcript Models and Sequences

KH2012:KH.C2.1048.v1.A.ND1-1
KH2012:KH.C2.1048.v1.A.SL2-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000010094
NCBI Reference Sequence	XM_002129448.3
NCBI Reference Sequence	XM_002129469.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cicl016e24

Plate: R1CiGC10g22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
Znf_RING/FYVE/PHD	Gene3D	Zinc finger, RING/FYVE/PHD-type
Ubox_domain	SMART	U box domain
Ubox_domain	ProSiteProfiles	U box domain
Ubox_domain	Pfam	U box domain
Znf_RING_CS	ProSitePatterns	Zinc finger, RING-type, conserved site
Znf_RING	ProSiteProfiles	Zinc finger, RING-type

GOSlim

16 results

GO Term	Annotation Origin	Type
protein polyubiquitination	Orthology	biological process
ubiquitin-protein transferase activity	Orthology	molecular function
protein binding	Orthology	molecular function
ATP binding	Blast	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Blast	cellular component
focal adhesion	Orthology	cellular component
protein ubiquitination	Orthology	biological process
nuclear body	Orthology	cellular component
transferase activity	Orthology	molecular function
enzyme binding	Blast	molecular function
ubiquitin protein ligase binding	Orthology	molecular function
metal ion binding	Orthology	molecular function
intracellular part	Blast	cellular component
macromolecular complex	Blast	cellular component

GO (Orthology)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
protein polyubiquitination	Hs	biological process
ubiquitin-protein transferase activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
focal adhesion	Hs	cellular component
protein ubiquitination	Hs	biological process
nuclear body	Hs	cellular component
transferase activity	Hs	molecular function
ubiquitin protein ligase binding	Hs	molecular function
ubiquitin-ubiquitin ligase activity	Hs	molecular function
metal ion binding	Hs	molecular function
ubiquitin protein ligase activity	Hs	molecular function

GO (Blast)