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GENE CARD

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  1. Gene 'Haaura.CG.MTP2014.S1...' > 
  2. Gene 'KH2012:KH.C14.6'

Gene Card

Best human hits

CNOT3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00004048

Gene Model ID

KH2012:KH.C14.6

Location

KhC14:1486071..1489564

Transcript Models and Sequences

  KH2012:KH.C14.6.v1.A.ND1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000000293
NCBI Reference Sequence XM_002128672.4
Collections

Gateway full ORF

2 results

cien58911

Plate: VES79_I13

cien217437

Plate: VES104_C01

Gene collection 1 (N. Satoh)

1 result

cieg010a08

Plate: R1CiGC17k03

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
Not_N Pfam CCR4-Not complex component, Not N-terminal domain
CCR4-NOT_su3/5 PIRSF CCR4-NOT complex, subunit 3/ 5
CCR4-NOT_su2/3/5_N_sf Gene3D CCR4-NOT complex subunit 2/3/5, N-terminal domain superfamily
NOT Pfam NOT2/NOT3/NOT5

GOSlim

15 results

GO Term Annotation Origin Type
protein binding Orthology molecular function
nucleus Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
multicellular organism development Orthology biological process
nuclear-transcribed mRNA catabolic process Orthology biological process
cytoplasmic part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
macromolecular complex Orthology cellular component
regulation of gene expression Orthology biological process
negative regulation of gene expression Orthology biological process
intracellular part Orthology cellular component
cellular process Orthology biological process

GO (Orthology)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay Hs biological process
nuclear-transcribed mRNA poly(A) tail shortening Hs biological process
P-body Hs cellular component
protein binding Hs molecular function
nucleus Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of translation Hs biological process
multicellular organism development Hs biological process
negative regulation of translation Hs biological process
CCR4-NOT complex Hs cellular component
CCR4-NOT core complex Hs cellular component
gene silencing by RNA Hs biological process

GO (Blast)

7 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
P-body Hs cellular component 341 1.65e-106
protein binding Hs molecular function 341 1.65e-106
nucleus Hs cellular component 341 1.65e-106
cytoplasm Hs cellular component 341 1.65e-106
cytosol Hs cellular component 341 1.65e-106
CCR4-NOT complex Hs cellular component 341 1.65e-106
CCR4-NOT core complex Hs cellular component 341 1.65e-106

GO (InterProScan)

3 results

GO Term Analysis Type e-value
nucleus Pfam cellular component 9.5E-88
regulation of transcription, DNA-templated PIRSF biological process 6.2E-128
CCR4-NOT core complex PIRSF cellular component 6.2E-128

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