Aniseed - Gene card

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000007334
NCBI Reference Sequence	NM_001078201.1
NCBI Reference Sequence	XM_009862513.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

citb4h19

Plate: R1CiGC29m09

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

1 results

Ci-cdx -4000/104 REG00000520 [ regulatory_region (extended_promoter) ]

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
Homeobox_CS	ProSitePatterns	Homeobox, conserved site
Homeobox_dom	SMART	Homeobox domain
Homeobox_metazoa	PRINTS	Homeobox domain, metazoa
Homeobox-like_sf	SUPERFAMILY	Homeobox-like domain superfamily
Homeobox_dom	Pfam	Homeobox domain
Homeobox_dom	ProSiteProfiles	Homeobox domain
Homeobox_dom	CDD	Homeobox domain

GOSlim

33 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Orthology	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
blood vessel development	Orthology	biological process
DNA binding	Orthology	molecular function
double-stranded DNA binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
transcription corepressor activity	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
transcription from RNA polymerase II promoter	Orthology	biological process
multicellular organism development	Orthology	biological process
positive regulation of cell proliferation	Orthology	biological process
cell differentiation	Orthology	biological process
sequence-specific DNA binding	Orthology	molecular function
transcription regulatory region DNA binding	Orthology	molecular function
positive regulation of transcription, DNA-templated	Orthology	biological process
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
intracellular non-membrane-bounded organelle	Orthology	cellular component
nuclear lumen	Orthology	cellular component
RNA polymerase II regulatory region sequence-specific DNA binding	Orthology	molecular function
intracellular transport	Orthology	biological process
animal organ development	Orthology	biological process
anatomical structure morphogenesis	Orthology	biological process
anatomical structure formation involved in morphogenesis	Orthology	biological process
macromolecular complex	Orthology	cellular component
developmental process	Orthology	biological process
cellular process	Orthology	biological process
system development	Orthology	biological process

GO (Orthology)

39 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
condensed nuclear chromosome	Hs	cellular component
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II distal enhancer sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding	Hs	molecular function
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function
blood vessel development	Hs	biological process
DNA binding	Hs	molecular function
double-stranded DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
transcription corepressor activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
multicellular organism development	Hs	biological process
pattern specification process	Hs	biological process
positive regulation of cell proliferation	Hs	biological process
endosome to lysosome transport	Hs	biological process
animal organ morphogenesis	Hs	biological process
anterior/posterior axis specification	Hs	biological process
anterior/posterior pattern specification	Hs	biological process
regulation of somitogenesis	Hs	biological process
transcriptional repressor complex	Hs	cellular component
cell differentiation	Hs	biological process
somatic stem cell population maintenance	Hs	biological process
sequence-specific DNA binding	Hs	molecular function
transcription regulatory region DNA binding	Hs	molecular function
establishment or maintenance of epithelial cell apical/basal polarity	Hs	biological process
positive regulation of cell differentiation	Hs	biological process
positive regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
bone morphogenesis	Hs	biological process
intestinal epithelial cell differentiation	Hs	biological process

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
condensed nuclear chromosome	Hs	cellular component	130	8.09e-35
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	120	2.49e-31
RNA polymerase II distal enhancer sequence-specific DNA binding	Hs	molecular function	130	8.09e-35
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	130	8.09e-35
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	120	2.49e-31
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding	Hs	molecular function	124	7.57e-33
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	130	8.09e-35
DNA binding	Hs	molecular function	130	8.09e-35
double-stranded DNA binding	Hs	molecular function	130	8.09e-35
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	130	8.09e-35
transcription corepressor activity	Hs	molecular function	130	8.09e-35
protein binding	Hs	molecular function	124	7.57e-33
nucleus	Hs	cellular component	130	8.09e-35
nucleoplasm	Hs	cellular component	130	8.09e-35
transcriptional repressor complex	Hs	cellular component	130	8.09e-35
sequence-specific DNA binding	Hs	molecular function	130	8.09e-35
transcription regulatory region DNA binding	Hs	molecular function	124	7.57e-33

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
DNA binding	SUPERFAMILY	molecular function	2.95E-21
regulation of transcription, DNA-templated	ProSitePatterns	biological process
sequence-specific DNA binding	ProSitePatterns	molecular function

Gene Card

Best human hits

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Transcript Models and Sequences