Aniseed - Gene card

Gene Card

Best human hits

BPI; BPIFC; LBP

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00003825

Gene Model ID

KH2012:KH.C14.395

Location

KhC14:1529730..1537253

Transcript Models and Sequences

KH2012:KH.C14.395.v1.R.ND1-1
KH2012:KH.C14.395.v2.A.SL2-1

External Database Gene Card

External database links

5 results

Database	Gene ID
ENSEMBL	ENSCING00000021171
NCBI Reference Sequence	XM_002127415.2
NCBI Reference Sequence	XM_018814936.1
NCBI Reference Sequence	XM_018814937.1
NCBI Reference Sequence	XM_018814938.1

Collections

Gateway full ORF

1 result

Gene collection 1 (N. Satoh)

1 result

cilv004g17

Plate: R1CiGC25o11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
Bactericidal_perm-incr_a/b_dom	SUPERFAMILY	Bactericidal permeability-increasing protein, alpha/beta domain superfamily
Lipid-bd_serum_glycop_N	SMART	Lipid-binding serum glycoprotein, N-terminal
BPI/LBP/Plunc	PANTHER	BPI/LBP/Plunc family
Lipid-bd_serum_glycop_C	SMART	Lipid-binding serum glycoprotein, C-terminal
Lipid-bd_serum_glycop_N	Pfam	Lipid-binding serum glycoprotein, N-terminal
Lipid-bd_serum_glycop_C	Pfam	Lipid-binding serum glycoprotein, C-terminal
BPI	PANTHER	Bactericidal permeability-increasing protein

GOSlim

45 results

GO Term	Annotation Origin	Type
immune system process	Orthology	biological process
receptor binding	Orthology	molecular function
protein binding	Orthology	molecular function
extracellular region	Orthology	cellular component
extracellular space	Orthology	cellular component
cytoplasm	Orthology	cellular component
integral component of plasma membrane	Orthology	cellular component
immune response	Orthology	biological process
cell surface	Orthology	cellular component
membrane	Orthology	cellular component
cytokine-mediated signaling pathway	Orthology	biological process
response to lipopolysaccharide	Orthology	biological process
innate immune response	Orthology	biological process
extracellular exosome	Orthology	cellular component
endoplasmic reticulum lumen	Orthology	cellular component
vesicle	Orthology	cellular component
carbohydrate derivative binding	Orthology	molecular function
signal transduction	Orthology	biological process
cellular process	Orthology	biological process
anion binding	Orthology	molecular function
organic substance transport	Orthology	biological process
defense response	Orthology	biological process
binding	Orthology	molecular function
cell surface receptor signaling pathway	Orthology	biological process
cellular response to organic substance	Orthology	biological process
cytoplasmic vesicle	Orthology	cellular component
lysosome	Orthology	cellular component
vacuolar part	Orthology	cellular component
endomembrane system	Orthology	cellular component
intracellular organelle lumen	Orthology	cellular component
intracellular organelle part	Orthology	cellular component
response to bacterium	Orthology	biological process
cell migration	Orthology	biological process
chemotaxis	Orthology	biological process
ion transport	Orthology	biological process
organic substance metabolic process	Orthology	biological process
cellular metabolic process	Orthology	biological process
small molecule binding	Orthology	molecular function
organic cyclic compound binding	Orthology	molecular function
reproductive process	Orthology	biological process
cell motility	Orthology	biological process
cation binding	Orthology	molecular function
macromolecular complex	Orthology	cellular component
cellular protein modification process	Orthology	biological process
phosphate-containing compound metabolic process	Orthology	biological process

GO (Orthology)

71 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
lipopolysaccharide binding	Hs	molecular function
toll-like receptor signaling pathway	Hs	biological process
macrophage activation involved in immune response	Hs	biological process
immune system process	Hs	biological process
receptor binding	Hs	molecular function
protein binding	Hs	molecular function
phospholipid binding	Hs	molecular function
extracellular region	Hs	cellular component
extracellular space	Hs	cellular component
cytoplasm	Hs	cellular component
integral component of plasma membrane	Hs	cellular component
lipid transport	Hs	biological process
acute-phase response	Hs	biological process
immune response	Hs	biological process
cellular defense response	Hs	biological process
lipid binding	Hs	molecular function
cell surface	Hs	cellular component
membrane	Hs	cellular component
cytokine-mediated signaling pathway	Hs	biological process
lipopolysaccharide-mediated signaling pathway	Hs	biological process
response to lipopolysaccharide	Hs	biological process
positive regulation of chemokine production	Hs	biological process
toll-like receptor 4 signaling pathway	Hs	biological process
azurophil granule lumen	Hs	cellular component
specific granule lumen	Hs	cellular component
defense response to bacterium	Hs	biological process
negative regulation of macrophage activation	Hs	biological process
negative regulation of growth of symbiont in host	Hs	biological process
innate immune response	Hs	biological process
defense response to Gram-negative bacterium	Hs	biological process
defense response to Gram-positive bacterium	Hs	biological process
extracellular exosome	Hs	cellular component
lipoteichoic acid binding	Hs	molecular function
cellular response to lipopolysaccharide	Hs	biological process
lipopeptide binding	Hs	molecular function
positive regulation of neutrophil chemotaxis	Hs	biological process
lipid transporter activity	Hs	molecular function
phospholipid transporter activity	Hs	molecular function
endoplasmic reticulum lumen	Hs	cellular component
lipid metabolic process	Hs	biological process
triglyceride metabolic process	Hs	biological process
steroid metabolic process	Hs	biological process
cholesterol metabolic process	Hs	biological process
phosphatidylethanolamine binding	Hs	molecular function
phosphatidylcholine transporter activity	Hs	molecular function
regulation of cholesterol efflux	Hs	biological process
cholesterol binding	Hs	molecular function
phospholipid transport	Hs	biological process
cholesterol transporter activity	Hs	molecular function
triglyceride binding	Hs	molecular function
diacylglycerol binding	Hs	molecular function
cholesterol transport	Hs	biological process
flagellated sperm motility	Hs	biological process
phosphatidylcholine binding	Hs	molecular function
vesicle	Hs	cellular component
high-density lipoprotein particle	Hs	cellular component
very-low-density lipoprotein particle remodeling	Hs	biological process
ceramide transporter activity	Hs	molecular function
ceramide transport	Hs	biological process
cholesterol homeostasis	Hs	biological process
post-translational protein modification	Hs	biological process
reverse cholesterol transport	Hs	biological process
phosphatidylcholine metabolic process	Hs	biological process
lipid homeostasis	Hs	biological process
phospholipid homeostasis	Hs	biological process
phosphatidic acid binding	Hs	molecular function
triglyceride homeostasis	Hs	biological process
ceramide binding	Hs	molecular function
phosphatidylglycerol binding	Hs	molecular function
phosphatidylethanolamine transporter activity	Hs	molecular function
phosphatidic acid transporter activity	Hs	molecular function

GO (Blast)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
lipopolysaccharide binding	Hs	molecular function	172	2.97e-48
receptor binding	Hs	molecular function	172	2.97e-48
protein binding	Hs	molecular function	172	2.97e-48
phospholipid binding	Hs	molecular function	127	1.25e-31
extracellular region	Hs	cellular component	172	2.97e-48
extracellular space	Hs	cellular component	172	2.97e-48
cytoplasm	Hs	cellular component	171	1.57e-47
integral component of plasma membrane	Hs	cellular component	171	1.57e-47
lipid binding	Hs	molecular function	172	2.97e-48
cell surface	Hs	cellular component	172	2.97e-48
membrane	Hs	cellular component	172	2.97e-48
azurophil granule lumen	Hs	cellular component	171	1.57e-47
specific granule lumen	Hs	cellular component	171	1.57e-47
extracellular exosome	Hs	cellular component	172	2.97e-48
lipoteichoic acid binding	Hs	molecular function	172	2.97e-48
lipopeptide binding	Hs	molecular function	172	2.97e-48

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
lipopolysaccharide binding	PANTHER	molecular function	1.1E-93
immune response	PANTHER	biological process	1.1E-93
lipid binding	SUPERFAMILY	molecular function	1.99E-50
defense response to Gram-negative bacterium	PANTHER	biological process	1.1E-93