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Gene Card

Best human hits

TRIM24; TRIM28; TRIM33

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00003778

Gene Model ID

KH2012:KH.C14.349

Location

KhC14:869435..886614

Transcript Models and Sequences

  KH2012:KH.C14.349.v1.A.SL1-1
KH2012:KH.C14.349.v1.A.SL3-1
KH2012:KH.C14.349.v2.A.SL2-1

External Database Gene Card

External database links

5 results

Database Gene ID
ENSEMBL ENSCING00000005118
NCBI Reference Sequence NM_001078455.1
NCBI Reference Sequence XM_018814694.1
NCBI Reference Sequence XM_018814695.1
NCBI Reference Sequence XM_018814696.1
Collections

Gateway full ORF

1 result

cien225124

Plate: VES105_B03

Gene collection 1 (N. Satoh)

2 results

ciad013l07

Plate: R1CiGC02k22

citb032j03

Plate: R1CiGC31h08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

17 results

IPR Term Analysis Definition
Bromodomain Pfam Bromodomain
Znf_PHD-finger ProSiteProfiles Zinc finger, PHD-finger
Zinc_finger_PHD-type_CS ProSitePatterns Zinc finger, PHD-type, conserved site
Bbox_C SMART B-box, C-terminal
Znf_RING SMART Zinc finger, RING-type
Znf_RING_CS ProSitePatterns Zinc finger, RING-type, conserved site
Znf_PHD SMART Zinc finger, PHD-type
Znf_B-box CDD B-box-type zinc finger
Bromodomain ProSiteProfiles Bromodomain
Znf_B-box ProSiteProfiles B-box-type zinc finger
Bromodomain-like_sf Gene3D Bromodomain-like superfamily
Bromodomain SMART Bromodomain
Znf_FYVE_PHD SUPERFAMILY Zinc finger, FYVE/PHD-type
Bromodomain PRINTS Bromodomain
Bromodomain-like_sf SUPERFAMILY Bromodomain-like superfamily
Znf_B-box Pfam B-box-type zinc finger
Znf_B-box SMART B-box-type zinc finger

GOSlim

60 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
DNA binding Orthology molecular function
chromatin binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcription coactivator activity Orthology molecular function
transcription corepressor activity Orthology molecular function
RNA binding Orthology molecular function
protein kinase activity Orthology molecular function
ubiquitin-protein transferase activity Orthology molecular function
receptor binding Orthology molecular function
protein binding Orthology molecular function
intracellular Orthology cellular component
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
DNA repair Orthology biological process
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
transcription initiation from RNA polymerase II promoter Orthology biological process
protein phosphorylation Orthology biological process
zinc ion binding Orthology molecular function
negative regulation of cell proliferation Orthology biological process
positive regulation of gene expression Orthology biological process
protein ubiquitination Orthology biological process
transferase activity Orthology molecular function
ubiquitin protein ligase binding Orthology molecular function
regulation of apoptotic process Orthology biological process
sequence-specific DNA binding Orthology molecular function
innate immune response Orthology biological process
negative regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
protein autophosphorylation Orthology biological process
metal ion binding Orthology molecular function
protein oligomerization Orthology biological process
negative regulation of nucleic acid-templated transcription Orthology biological process
intracellular organelle part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
animal organ development Orthology biological process
cell differentiation Orthology biological process
nuclear lumen Orthology cellular component
organelle organization Orthology biological process
small GTPase mediated signal transduction Orthology biological process
transcription factor binding Orthology molecular function
protein modification by small protein conjugation Orthology biological process
cell surface receptor signaling pathway Orthology biological process
regulation of signal transduction Orthology biological process
cellular response to organic substance Orthology biological process
protein metabolic process Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
negative regulation of signal transduction Orthology biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
DNA metabolic process Orthology biological process
multicellular organism development Orthology biological process
anatomical structure morphogenesis Orthology biological process
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
intracellular part Orthology cellular component

GO (Orthology)

73 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
chromatin Hs cellular component
RNA polymerase II transcription coactivator activity Hs molecular function
epithelial to mesenchymal transition Hs biological process
p53 binding Hs molecular function
DNA binding Hs molecular function
chromatin binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
transcription coactivator activity Hs molecular function
transcription corepressor activity Hs molecular function
RNA binding Hs molecular function
protein kinase activity Hs molecular function
protein tyrosine kinase activity Hs molecular function
ubiquitin-protein transferase activity Hs molecular function
receptor binding Hs molecular function
protein binding Hs molecular function
intracellular Hs cellular component
nucleus Hs cellular component
nucleoplasm Hs cellular component
nuclear euchromatin Hs cellular component
nuclear heterochromatin Hs cellular component
perichromatin fibrils Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
DNA repair Hs biological process
chromatin organization Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
transcription initiation from RNA polymerase II promoter Hs biological process
protein phosphorylation Hs biological process
Ras protein signal transduction Hs biological process
zinc ion binding Hs molecular function
negative regulation of cell proliferation Hs biological process
positive regulation of gene expression Hs biological process
protein ubiquitination Hs biological process
transferase activity Hs molecular function
ligand-dependent nuclear receptor binding Hs molecular function
protein sumoylation Hs biological process
regulation of transforming growth factor beta receptor signaling pathway Hs biological process
peptidyl-tyrosine phosphorylation Hs biological process
protein catabolic process Hs biological process
negative regulation of BMP signaling pathway Hs biological process
ubiquitin protein ligase binding Hs molecular function
regulation of protein stability Hs biological process
estrogen response element binding Hs molecular function
Krueppel-associated box domain binding Hs molecular function
regulation of apoptotic process Hs biological process
positive regulation of transcription factor import into nucleus Hs biological process
DNA methylation involved in embryo development Hs biological process
positive regulation of DNA binding Hs biological process
sequence-specific DNA binding Hs molecular function
innate immune response Hs biological process
positive regulation of DNA repair Hs biological process
negative regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
protein autophosphorylation Hs biological process
metal ion binding Hs molecular function
protein oligomerization Hs biological process
calcium ion homeostasis Hs biological process
convergent extension involved in axis elongation Hs biological process
ubiquitin protein ligase activity Hs molecular function
chromo shadow domain binding Hs molecular function
co-SMAD binding Hs molecular function
R-SMAD binding Hs molecular function
lysine-acetylated histone binding Hs molecular function
cellular response to estrogen stimulus Hs biological process
positive regulation of methylation-dependent chromatin silencing Hs biological process
RNA polymerase II transcription factor complex Hs cellular component
negative regulation of nucleic acid-templated transcription Hs biological process
promoter-specific chromatin binding Hs molecular function
aggresome Hs cellular component

GO (Blast)

37 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
chromatin Hs cellular component 158 1.26e-39
RNA polymerase II transcription coactivator activity Hs molecular function 158 1.26e-39
p53 binding Hs molecular function 175 1.64e-44
DNA binding Hs molecular function 178 1.87e-45
chromatin binding Hs molecular function 175 1.64e-44
transcription factor activity, sequence-specific DNA binding Hs molecular function 158 1.26e-39
transcription coactivator activity Hs molecular function 175 1.64e-44
transcription corepressor activity Hs molecular function 158 1.26e-39
RNA binding Hs molecular function 158 1.26e-39
protein kinase activity Hs molecular function 175 1.64e-44
protein tyrosine kinase activity Hs molecular function 175 1.64e-44
ubiquitin-protein transferase activity Hs molecular function 178 1.87e-45
receptor binding Hs molecular function 175 1.64e-44
protein binding Hs molecular function 178 1.87e-45
intracellular Hs cellular component 178 1.87e-45
nucleus Hs cellular component 178 1.87e-45
nucleoplasm Hs cellular component 178 1.87e-45
nuclear euchromatin Hs cellular component 175 1.64e-44
nuclear heterochromatin Hs cellular component 158 1.26e-39
perichromatin fibrils Hs cellular component 175 1.64e-44
cytoplasm Hs cellular component 175 1.64e-44
cytosol Hs cellular component 175 1.64e-44
zinc ion binding Hs molecular function 178 1.87e-45
transferase activity Hs molecular function 178 1.87e-45
ligand-dependent nuclear receptor binding Hs molecular function 175 1.64e-44
ubiquitin protein ligase binding Hs molecular function 158 1.26e-39
estrogen response element binding Hs molecular function 175 1.64e-44
Krueppel-associated box domain binding Hs molecular function 158 1.26e-39
sequence-specific DNA binding Hs molecular function 175 1.64e-44
metal ion binding Hs molecular function 178 1.87e-45
ubiquitin protein ligase activity Hs molecular function 175 1.64e-44
chromo shadow domain binding Hs molecular function 158 1.26e-39
co-SMAD binding Hs molecular function 178 1.87e-45
R-SMAD binding Hs molecular function 178 1.87e-45
lysine-acetylated histone binding Hs molecular function 175 1.64e-44
RNA polymerase II transcription factor complex Hs cellular component 158 1.26e-39
promoter-specific chromatin binding Hs molecular function 158 1.26e-39

GO (InterProScan)

3 results

GO Term Analysis Type e-value
protein binding Gene3D molecular function 2.4E-51
intracellular CDD cellular component 3.93144E-10
zinc ion binding CDD molecular function 3.93144E-10

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