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Gene Card

Best human hits

MYF5; MYF6; MYOD1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00003733

Gene Model ID

KH2012:KH.C14.307

Location

KhC14:4306194..4311771

Transcript Models and Sequences

  KH2012:KH.C14.307.v1.A.SL1-1
KH2012:KH.C14.307.v2.A.SL1-2

External Database Gene Card

External database links

4 results

Database Gene ID
ENSEMBL ENSCING00000007328
NCBI Reference Sequence NM_001078487.1
NCBI Reference Sequence XM_009862515.2
NCBI Reference Sequence XR_001975034.1
Collections

Gateway full ORF

2 results

cien38458

Plate: VES76_L10

cien80020

Plate: VES82_E22

Gene collection 1 (N. Satoh)

2 results

cicl007n20

Plate: R1CiGC09o01

cign048h22

Plate: R1CiGC42d13

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

1 results

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
bHLH_dom CDD Myc-type, basic helix-loop-helix (bHLH) domain
bHLH_dom SMART Myc-type, basic helix-loop-helix (bHLH) domain
Basic Pfam Myogenic basic muscle-specific protein
bHLH_dom Pfam Myc-type, basic helix-loop-helix (bHLH) domain
HLH_DNA-bd_sf Gene3D Helix-loop-helix DNA-binding domain superfamily
Basic SMART Myogenic basic muscle-specific protein
bHLH_dom ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain
HLH_DNA-bd_sf SUPERFAMILY Helix-loop-helix DNA-binding domain superfamily

GOSlim

63 results

GO Term Annotation Origin Type
RNA polymerase II regulatory region sequence-specific DNA binding Orthology molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Orthology molecular function
DNA binding Orthology molecular function
chromatin binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcription coactivator activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
protein phosphorylation Orthology biological process
multicellular organism development Orthology biological process
transcription factor binding Orthology molecular function
regulation of gene expression Orthology biological process
nuclear body Orthology cellular component
enzyme binding Orthology molecular function
cell differentiation Orthology biological process
extracellular matrix organization Orthology biological process
ubiquitin protein ligase binding Orthology molecular function
sequence-specific DNA binding Orthology molecular function
negative regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
protein heterodimerization activity Orthology molecular function
protein dimerization activity Orthology molecular function
core promoter proximal region sequence-specific DNA binding Orthology molecular function
cell cycle Orthology biological process
negative regulation of cell proliferation Orthology biological process
mRNA splicing, via spliceosome Orthology biological process
intracellular non-membrane-bounded organelle Orthology cellular component
nuclear lumen Orthology cellular component
transcription regulatory region DNA binding Orthology molecular function
animal organ development Orthology biological process
anatomical structure morphogenesis Orthology biological process
anatomical structure formation involved in morphogenesis Orthology biological process
cell adhesion Orthology biological process
intracellular part Orthology cellular component
macromolecular complex Orthology cellular component
membrane organization Orthology biological process
cell communication Orthology biological process
cellular response to stress Orthology biological process
cytoplasmic part Orthology cellular component
receptor binding Orthology molecular function
anatomical structure development Orthology biological process
RNA splicing Orthology biological process
organelle organization Orthology biological process
cellular protein modification process Orthology biological process
cell development Orthology biological process
response to lipid Orthology biological process
cellular response to organic substance Orthology biological process
nuclear part Orthology cellular component
response to stimulus Orthology biological process
mRNA metabolic process Orthology biological process
phosphorylation Orthology biological process
transmembrane transport Orthology biological process
monovalent inorganic cation transport Orthology biological process

GO (Orthology)

80 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
regulation of alternative mRNA splicing, via spliceosome Hs biological process
nuclear chromatin Hs cellular component
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
core promoter binding Hs molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function
cartilage condensation Hs biological process
ossification Hs biological process
somitogenesis Hs biological process
regulation of cell-matrix adhesion Hs biological process
DNA binding Hs molecular function
chromatin binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function
transcription coactivator activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
transcription factor complex Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription from RNA polymerase II promoter Hs biological process
protein phosphorylation Hs biological process
multicellular organism development Hs biological process
muscle organ development Hs biological process
skeletal muscle tissue development Hs biological process
myoblast fusion Hs biological process
transcription factor binding Hs molecular function
cellular response to starvation Hs biological process
regulation of gene expression Hs biological process
nuclear body Hs cellular component
enzyme binding Hs molecular function
myofibril Hs cellular component
cell differentiation Hs biological process
extracellular matrix organization Hs biological process
chromatin DNA binding Hs molecular function
ubiquitin protein ligase binding Hs molecular function
nuclear hormone receptor binding Hs molecular function
skeletal muscle cell differentiation Hs biological process
muscle cell fate commitment Hs biological process
camera-type eye development Hs biological process
regulation of RNA splicing Hs biological process
sequence-specific DNA binding Hs molecular function
histone H3 acetylation Hs biological process
histone H4 acetylation Hs biological process
myoblast differentiation Hs biological process
positive regulation of myoblast differentiation Hs biological process
negative regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
protein heterodimerization activity Hs molecular function
protein dimerization activity Hs molecular function
muscle organ morphogenesis Hs biological process
skeletal muscle fiber development Hs biological process
positive regulation of skeletal muscle fiber development Hs biological process
striated muscle cell differentiation Hs biological process
muscle tissue morphogenesis Hs biological process
E-box binding Hs molecular function
cellular response to tumor necrosis factor Hs biological process
cellular response to glucocorticoid stimulus Hs biological process
cellular response to estradiol stimulus Hs biological process
RNA polymerase II transcription factor complex Hs cellular component
positive regulation of myoblast fusion Hs biological process
core promoter proximal region sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
cell cycle Hs biological process
negative regulation of cell proliferation Hs biological process
response to gravity Hs biological process
positive regulation of myotube differentiation Hs biological process
skeletal muscle atrophy Hs biological process
protein-DNA complex Hs cellular component
mRNA transcription from RNA polymerase II promoter Hs biological process
positive regulation of cell cycle arrest Hs biological process
cellular response to retinoic acid Hs biological process
regulation of myoblast fusion Hs biological process
positive regulation of oxidative phosphorylation Hs biological process

GO (Blast)

29 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nuclear chromatin Hs cellular component 122 6.86e-31
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 122 6.86e-31
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 126 6.28e-33
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 126 6.28e-33
core promoter binding Hs molecular function 122 6.86e-31
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 126 6.28e-33
DNA binding Hs molecular function 126 6.28e-33
chromatin binding Hs molecular function 122 6.86e-31
transcription factor activity, sequence-specific DNA binding Hs molecular function 123 7.81e-32
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 126 6.28e-33
transcription coactivator activity Hs molecular function 122 6.86e-31
protein binding Hs molecular function 126 6.28e-33
nucleus Hs cellular component 126 6.28e-33
nucleoplasm Hs cellular component 126 6.28e-33
transcription factor complex Hs cellular component 122 6.86e-31
cytoplasm Hs cellular component 122 6.86e-31
cytosol Hs cellular component 122 6.86e-31
transcription factor binding Hs molecular function 122 6.86e-31
nuclear body Hs cellular component 122 6.86e-31
enzyme binding Hs molecular function 122 6.86e-31
myofibril Hs cellular component 122 6.86e-31
chromatin DNA binding Hs molecular function 122 6.86e-31
ubiquitin protein ligase binding Hs molecular function 122 6.86e-31
nuclear hormone receptor binding Hs molecular function 122 6.86e-31
sequence-specific DNA binding Hs molecular function 126 6.28e-33
protein heterodimerization activity Hs molecular function 126 6.28e-33
protein dimerization activity Hs molecular function 126 6.28e-33
E-box binding Hs molecular function 126 6.28e-33
RNA polymerase II transcription factor complex Hs cellular component 126 6.28e-33

GO (InterProScan)

5 results

GO Term Analysis Type e-value
DNA binding Pfam molecular function 1.3E-8
nucleus Pfam cellular component 1.3E-8
regulation of transcription, DNA-templated Pfam biological process 1.3E-8
muscle organ development Pfam biological process 1.3E-8
protein dimerization activity Gene3D molecular function 1.1E-17

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