Aniseed - Gene card

Gene Card

Best human hits

BTRC; FBXW11; FBXW7

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00003649

Gene Model ID

KH2012:KH.C14.230

Location

KhC14:26314..41909

Transcript Models and Sequences

KH2012:KH.C14.230.v1.A.SL2-1
KH2012:KH.C14.230.v2.A.SL2-1
KH2012:KH.C14.230.v3.A.SL5-1
KH2012:KH.C14.230.v3.R.ND1-1
KH2012:KH.C14.230.v4.A.SL3-1
KH2012:KH.C14.230.v5.A.SL4-1
KH2012:KH.C14.230.v6.A.SL3-1

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000001520
ENSEMBL	ENSCING00000010722
ENSEMBL	ENSCING00000022801
NCBI Reference Sequence	XM_009862402.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

citb2m2

Plate: R1CiGC28h12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

12 results

IPR Term	Analysis	Definition
WD40_repeat_CS	ProSitePatterns	WD40 repeat, conserved site
WD40/YVTN_repeat-like_dom_sf	Gene3D	WD40/YVTN repeat-like-containing domain superfamily
WD40_repeat	ProSiteProfiles	WD40 repeat
F-box_dom	Pfam	F-box domain
F-box-like_dom_sf	SUPERFAMILY	F-box-like domain superfamily
WD40_repeat_dom_sf	SUPERFAMILY	WD40-repeat-containing domain superfamily
WD40_repeat	SMART	WD40 repeat
F-box_dom	ProSiteProfiles	F-box domain
G-protein_beta_WD-40_rep	PRINTS	G-protein beta WD-40 repeat
WD40_repeat	Pfam	WD40 repeat
F-box_dom	SMART	F-box domain
WD40_repeat_dom	ProSiteProfiles	WD40-repeat-containing domain

GOSlim

34 results

GO Term	Annotation Origin	Type
protein polyubiquitination	Orthology	biological process
vasculature development	Orthology	biological process
ubiquitin-protein transferase activity	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
centrosome	Blast	cellular component
cytosol	Orthology	cellular component
protein ubiquitination	Orthology	biological process
ligase activity	Blast	molecular function
ubiquitin protein ligase binding	Orthology	molecular function
identical protein binding	Orthology	molecular function
protein dimerization activity	Blast	molecular function
organelle organization	Orthology	biological process
intracellular part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
proteolysis	Orthology	biological process
DNA replication	Orthology	biological process
protein localization	Orthology	biological process
cellular protein modification process	Orthology	biological process
cell surface receptor signaling pathway	Orthology	biological process
positive regulation of catalytic activity	Orthology	biological process
transmembrane signaling receptor activity	Orthology	molecular function
protein kinase activity	Orthology	molecular function
positive regulation of signal transduction	Orthology	biological process
negative regulation of signal transduction	Orthology	biological process
Notch signaling pathway	Orthology	biological process
intracellular signal transduction	Orthology	biological process
protein phosphorylation	Orthology	biological process
enzyme regulator activity	Orthology	molecular function
cell cycle G1/S phase transition	Orthology	biological process
regulation of cellular metabolic process	Orthology	biological process

GO (Orthology)

36 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
protein polyubiquitination	Hs	biological process
vasculature development	Hs	biological process
ubiquitin-protein transferase activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
sister chromatid cohesion	Hs	biological process
regulation of lipid storage	Hs	biological process
viral process	Hs	biological process
protein ubiquitination	Hs	biological process
SCF ubiquitin ligase complex	Hs	cellular component
cyclin binding	Hs	molecular function
protein binding, bridging	Hs	molecular function
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Hs	biological process
positive regulation of protein ubiquitination	Hs	biological process
ubiquitin protein ligase binding	Hs	molecular function
negative regulation of DNA endoreduplication	Hs	biological process
regulation of protein localization	Hs	biological process
identical protein binding	Hs	molecular function
post-translational protein modification	Hs	biological process
positive regulation of epidermal growth factor-activated receptor activity	Hs	biological process
negative regulation of Notch signaling pathway	Hs	biological process
phosphothreonine residue binding	Hs	molecular function
protein stabilization	Hs	biological process
positive regulation of ubiquitin-protein transferase activity	Hs	biological process
lipid homeostasis	Hs	biological process
positive regulation of ERK1 and ERK2 cascade	Hs	biological process
ubiquitin-protein transferase activator activity	Hs	molecular function
positive regulation of proteasomal protein catabolic process	Hs	biological process
regulation of cell cycle G1/S phase transition	Hs	biological process
regulation of autophagy of mitochondrion	Hs	biological process
Parkin-FBXW7-Cul1 ubiquitin ligase complex	Hs	cellular component
positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process	Hs	biological process

GO (Blast)

22 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
ubiquitin ligase complex	Hs	cellular component	234	1.41e-68
ubiquitin-protein transferase activity	Hs	molecular function	763	0.0
protein binding	Hs	molecular function	763	0.0
nucleus	Hs	cellular component	763	0.0
nucleoplasm	Hs	cellular component	763	0.0
nucleolus	Hs	cellular component	763	0.0
cytoplasm	Hs	cellular component	763	0.0
centrosome	Hs	cellular component	234	1.41e-68
cytosol	Hs	cellular component	763	0.0
beta-catenin binding	Hs	molecular function	234	5.22e-68
ligase activity	Hs	molecular function	234	5.22e-68
SCF ubiquitin ligase complex	Hs	cellular component	763	0.0
cyclin binding	Hs	molecular function	763	0.0
protein binding, bridging	Hs	molecular function	763	0.0
ubiquitin protein ligase binding	Hs	molecular function	763	0.0
identical protein binding	Hs	molecular function	763	0.0
protein phosphorylated amino acid binding	Hs	molecular function	234	5.22e-68
protein dimerization activity	Hs	molecular function	234	1.41e-68
phosphothreonine residue binding	Hs	molecular function	763	0.0
ubiquitin protein ligase activity	Hs	molecular function	234	1.41e-68
ubiquitin-protein transferase activator activity	Hs	molecular function	763	0.0
Parkin-FBXW7-Cul1 ubiquitin ligase complex	Hs	cellular component	763	0.0

GO (InterProScan)