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  2. Gene 'Phmamm.CG.MTP2014.S2...' > 

Gene Card

Best human hits

NUP62; NUP62CL

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00003504

Gene Model ID

KH2012:KH.C13.99

Location

KhC13:1393851..1403135

Transcript Models and Sequences

  KH2012:KH.C13.99.v1.A.SL1-1
KH2012:KH.C13.99.v2.A.SL2-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000007265
NCBI Reference Sequence XM_002129730.3
Collections

Gateway full ORF

2 results

cien137881

Plate: VES91_D21

cien146185

Plate: VES93_C02

Gene collection 1 (N. Satoh)

1 result

cieg019h22

Plate: R1CiGC18b23

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

2 results

IPR Term Analysis Definition
Nucleoporin_NSP1_C Pfam Nucleoporin, NSP1-like, C-terminal
NSP1/NUP62 PANTHER Nucleoporin NSP1/NUP62

GOSlim

51 results

GO Term Annotation Origin Type
chromatin binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nuclear envelope Orthology cellular component
cytoplasm Orthology cellular component
centrosome Orthology cellular component
microtubule organizing center Orthology cellular component
cytoskeleton Orthology cellular component
transcription, DNA-templated Orthology biological process
cell surface receptor signaling pathway Orthology biological process
spermatogenesis Orthology biological process
cell death Orthology biological process
negative regulation of cell proliferation Orthology biological process
regulation of signal transduction Orthology biological process
protein transport Orthology biological process
nuclear membrane Orthology cellular component
negative regulation of apoptotic process Orthology biological process
negative regulation of programmed cell death Orthology biological process
positive regulation of transcription, DNA-templated Orthology biological process
cytoskeletal part Orthology cellular component
microtubule cytoskeleton Orthology cellular component
anion binding Orthology molecular function
nuclear outer membrane-endoplasmic reticulum membrane network Orthology cellular component
membrane region Orthology cellular component
macromolecular complex Orthology cellular component
oxidation-reduction process Orthology biological process
kinase activity Orthology molecular function
intracellular protein transport Orthology biological process
gene expression Orthology biological process
establishment of protein localization to organelle Orthology biological process
intracellular transport Orthology biological process
microtubule-based process Orthology biological process
organelle organization Orthology biological process
signal transduction Orthology biological process
cellular response to organic substance Orthology biological process
protein modification by small protein conjugation Orthology biological process
structural molecule activity Orthology molecular function
cytoskeletal protein binding Orthology molecular function
positive regulation of signal transduction Orthology biological process
negative regulation of signal transduction Orthology biological process
transcription factor activity, sequence-specific DNA binding Orthology molecular function
intracellular signal transduction Orthology biological process
regulation of catalytic activity Orthology biological process
protein serine/threonine kinase activity Orthology molecular function
small GTPase mediated signal transduction Orthology biological process
receptor binding Orthology molecular function
transcription factor binding Orthology molecular function
organic substance transport Orthology biological process
negative regulation of gene expression Orthology biological process
midbody Orthology cellular component
protein localization to organelle Orthology biological process

GO (Orthology)

65 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
mitotic cell cycle Hs biological process
spindle pole Hs cellular component
chromatin binding Hs molecular function
protein binding Hs molecular function
phospholipid binding Hs molecular function
nucleus Hs cellular component
nuclear envelope Hs cellular component
annulate lamellae Hs cellular component
nuclear pore Hs cellular component
cytoplasm Hs cellular component
centrosome Hs cellular component
microtubule organizing center Hs cellular component
cytoskeleton Hs cellular component
regulation of glycolytic process Hs biological process
transcription, DNA-templated Hs biological process
mRNA export from nucleus Hs biological process
tRNA export from nucleus Hs biological process
protein import into nucleus Hs biological process
nucleocytoplasmic transport Hs biological process
mitotic metaphase plate congression Hs biological process
centrosome cycle Hs biological process
mitotic centrosome separation Hs biological process
cell surface receptor signaling pathway Hs biological process
spermatogenesis Hs biological process
cell aging Hs biological process
cell death Hs biological process
negative regulation of cell proliferation Hs biological process
hormone-mediated signaling pathway Hs biological process
regulation of signal transduction Hs biological process
protein transport Hs biological process
viral process Hs biological process
protein sumoylation Hs biological process
structural constituent of nuclear pore Hs molecular function
kinesin binding Hs molecular function
receptor signaling complex scaffold activity Hs molecular function
intracellular ribonucleoprotein complex Hs cellular component
Hsp70 protein binding Hs molecular function
nuclear membrane Hs cellular component
negative regulation of epidermal growth factor receptor signaling pathway Hs biological process
SH2 domain binding Hs molecular function
regulation of protein import into nucleus Hs biological process
negative regulation of apoptotic process Hs biological process
negative regulation of programmed cell death Hs biological process
positive regulation of I-kappaB kinase/NF-kappaB signaling Hs biological process
ubiquitin binding Hs molecular function
negative regulation of MAP kinase activity Hs biological process
host cell Hs cellular component
nuclear pore central transport channel Hs cellular component
positive regulation of epidermal growth factor receptor signaling pathway Hs biological process
positive regulation of mitotic nuclear division Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
regulation of Ras protein signal transduction Hs biological process
negative regulation of Ras protein signal transduction Hs biological process
thyroid hormone receptor binding Hs molecular function
mRNA transport Hs biological process
nuclear transport Hs biological process
PTB domain binding Hs molecular function
Hsp90 protein binding Hs molecular function
regulation of mitotic spindle organization Hs biological process
regulation of gene silencing by miRNA Hs biological process
ribonucleoprotein complex export from nucleus Hs biological process
mitotic spindle Hs cellular component
Flemming body Hs cellular component
centriole assembly Hs biological process
positive regulation of protein localization to centrosome Hs biological process

GO (Blast)

27 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
spindle pole Hs cellular component 271 1.35e-85
chromatin binding Hs molecular function 271 1.35e-85
protein binding Hs molecular function 271 1.35e-85
phospholipid binding Hs molecular function 271 1.35e-85
nucleus Hs cellular component 271 1.35e-85
nuclear envelope Hs cellular component 271 1.35e-85
annulate lamellae Hs cellular component 271 1.35e-85
nuclear pore Hs cellular component 271 1.35e-85
cytoplasm Hs cellular component 271 1.35e-85
centrosome Hs cellular component 271 1.35e-85
microtubule organizing center Hs cellular component 271 1.35e-85
cytoskeleton Hs cellular component 271 1.35e-85
structural constituent of nuclear pore Hs molecular function 271 1.35e-85
kinesin binding Hs molecular function 271 1.35e-85
receptor signaling complex scaffold activity Hs molecular function 271 1.35e-85
intracellular ribonucleoprotein complex Hs cellular component 271 1.35e-85
Hsp70 protein binding Hs molecular function 271 1.35e-85
nuclear membrane Hs cellular component 271 1.35e-85
SH2 domain binding Hs molecular function 271 1.35e-85
ubiquitin binding Hs molecular function 271 1.35e-85
host cell Hs cellular component 271 1.35e-85
nuclear pore central transport channel Hs cellular component 271 1.35e-85
thyroid hormone receptor binding Hs molecular function 271 1.35e-85
PTB domain binding Hs molecular function 271 1.35e-85
Hsp90 protein binding Hs molecular function 271 1.35e-85
mitotic spindle Hs cellular component 271 1.35e-85
Flemming body Hs cellular component 271 1.35e-85

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nuclear pore PANTHER cellular component 2.1E-116
structural constituent of nuclear pore PANTHER molecular function 2.1E-116

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