Aniseed - Gene card

Gene 'KH2012:KH.C13.143'

Gene Card

Best human hits

CBFA2T2; SMYD3; ZMYND19

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00003359

Gene Model ID

KH2012:KH.C13.143

Location

KhC13:1649979..1652111

Transcript Models and Sequences

KH2012:KH.C13.143.v1.A.SL1-1
KH2012:KH.C13.143.v1.A.SL2-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000001536
NCBI Reference Sequence	NM_001129871.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cicl016a03

Plate: R1CiGC10c18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
Znf_MYND	Pfam	Zinc finger, MYND-type
Znf_MYND	ProSiteProfiles	Zinc finger, MYND-type
ZMYND19	PANTHER	Zinc finger MYND domain-containing protein 19
HNH_nuc	Pfam	HNH nuclease

GOSlim

18 results

GO Term	Annotation Origin	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
transcription corepressor activity	Blast	molecular function
protein binding	Orthology	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Orthology	cellular component
cytosol	Blast	cellular component
plasma membrane	Orthology	cellular component
membrane	Orthology	cellular component
transferase activity	Blast	molecular function
synapse	Orthology	cellular component
metal ion binding	Orthology	molecular function
enzyme binding	Blast	molecular function
RNA polymerase II regulatory region sequence-specific DNA binding	Blast	molecular function
metabolic process	Blast	biological process
organelle organization	Blast	biological process
cellular protein modification process	Blast	biological process

GO (Orthology)

6 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
protein binding	Hs	molecular function
cytoplasm	Hs	cellular component
plasma membrane	Hs	cellular component
membrane	Hs	cellular component
synapse	Hs	cellular component
metal ion binding	Hs	molecular function

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	39.7	0.001
RNA polymerase II core binding	Hs	molecular function	39.7	0.001
RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding	Hs	molecular function	39.7	0.001
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	38.5	0.003
transcription corepressor activity	Hs	molecular function	38.5	0.003
protein binding	Hs	molecular function	282	4.97e-97
nucleus	Hs	cellular component	39.7	0.001
nucleoplasm	Hs	cellular component	39.7	0.001
cytoplasm	Hs	cellular component	282	4.97e-97
cytosol	Hs	cellular component	39.7	0.001
plasma membrane	Hs	cellular component	282	4.97e-97
methyltransferase activity	Hs	molecular function	39.7	0.001
membrane	Hs	cellular component	282	4.97e-97
transferase activity	Hs	molecular function	39.7	0.001
histone-lysine N-methyltransferase activity	Hs	molecular function	39.7	0.001
synapse	Hs	cellular component	282	4.97e-97
metal ion binding	Hs	molecular function	282	4.97e-97

GO (InterProScan)