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Gene Card

Best human hits

AC118549.1; MYSM1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00003342

Gene Model ID

KH2012:KH.C13.128

Location

KhC13:962907..971557

Transcript Models and Sequences

  KH2012:KH.C13.128.v1.A.SL1-1

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000002486
NCBI Reference Sequence NM_001048001.1
NCBI Reference Sequence XM_009862320.1
Collections

Gateway full ORF

2 results

cien28966

Plate: VES74_B23

cima835803

Plate: VES62_C21

Gene collection 1 (N. Satoh)

2 results

citb012g18

Plate: R1CiGC30k16

cieg054i18

Plate: R1CiGC24o23

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
Myb_dom ProSiteProfiles Myb domain
Znf_ZZ SMART Zinc finger, ZZ-type
SANT/Myb SMART SANT/Myb domain
Znf_ZZ Pfam Zinc finger, ZZ-type
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily
SANT/Myb Pfam SANT/Myb domain
Znf_ZZ ProSiteProfiles Zinc finger, ZZ-type
SANT/Myb CDD SANT/Myb domain

GOSlim

20 results

GO Term Annotation Origin Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
DNA binding Orthology molecular function
transcription coactivator activity Blast molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Blast cellular component
nucleolus Orthology cellular component
plasma membrane Blast cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
peptidase activity Blast molecular function
metallopeptidase activity Blast molecular function
zinc ion binding Orthology molecular function
hydrolase activity Blast molecular function
macromolecular complex binding Blast molecular function
metal ion binding Orthology molecular function
nucleoplasm part Orthology cellular component
macromolecular complex Orthology cellular component
peptidase activity, acting on L-amino acid peptides Blast molecular function

GO (Orthology)

11 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
Ada2/Gcn5/Ada3 transcription activator complex Hs cellular component
nucleolus Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
zinc ion binding Hs molecular function
metal ion binding Hs molecular function

GO (Blast)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 287 1.72e-82
DNA binding Hs molecular function 287 1.72e-82
transcription coactivator activity Hs molecular function 44.7 3.42e-04
thiol-dependent ubiquitin-specific protease activity Hs molecular function 44.7 3.42e-04
protein binding Hs molecular function 287 1.72e-82
nucleus Hs cellular component 287 1.72e-82
nucleoplasm Hs cellular component 44.7 3.42e-04
Ada2/Gcn5/Ada3 transcription activator complex Hs cellular component 287 1.72e-82
nucleolus Hs cellular component 287 1.72e-82
plasma membrane Hs cellular component 44.7 3.42e-04
peptidase activity Hs molecular function 44.7 3.42e-04
metallopeptidase activity Hs molecular function 44.7 3.42e-04
zinc ion binding Hs molecular function 287 1.72e-82
hydrolase activity Hs molecular function 44.7 3.42e-04
thiol-dependent ubiquitinyl hydrolase activity Hs molecular function 44.7 3.42e-04
histone binding Hs molecular function 44.7 3.42e-04
macromolecular complex binding Hs molecular function 44.7 3.42e-04
metal ion binding Hs molecular function 287 1.72e-82

GO (InterProScan)

2 results

GO Term Analysis Type e-value
DNA binding SUPERFAMILY molecular function 9.72E-8
zinc ion binding Pfam molecular function 3.8E-8

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