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Gene Card

Best human hits

THOC1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00003227

Gene Model ID

KH2012:KH.C12.651

Location

KhC12:2843326..2853810

Transcript Models and Sequences

  KH2012:KH.C12.651.v1.A.ND1-1
KH2012:KH.C12.651.v1.A.nonSL2-1
KH2012:KH.C12.651.v1.A.nonSL3-1

External Database Gene Card

External database links

4 results

Database Gene ID
ENSEMBL ENSCING00000007663
ENSEMBL ENSCING00000021115
NCBI Reference Sequence XM_002123765.4
NCBI Reference Sequence XM_018814530.1
Collections

Gateway full ORF

2 results

cien112951

Plate: VES88_O03

cima85004

Plate: VES56_P22

Gene collection 1 (N. Satoh)

2 results

citb12c6

Plate: R1CiGC30g24

cicl006p12

Plate: R1CiGC09c21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
THO_THOC1 Pfam THO complex, subunit THOC1
DEATH-like_dom_sf SUPERFAMILY Death-like domain superfamily
Death_domain Pfam Death domain
Death_domain ProSiteProfiles Death domain

GOSlim

29 results

GO Term Annotation Origin Type
DNA binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
RNA processing Orthology biological process
mRNA processing Orthology biological process
apoptotic process Orthology biological process
signal transduction Orthology biological process
RNA splicing Orthology biological process
nuclear speck Orthology cellular component
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
nuclear lumen Orthology cellular component
transcription from RNA polymerase II promoter Orthology biological process
organic substance transport Orthology biological process
intracellular transport Orthology biological process
intracellular protein transport Orthology biological process
gene expression Orthology biological process
DNA replication Orthology biological process
positive regulation of transcription, DNA-templated Orthology biological process
extracellular region part Orthology cellular component
cell cycle Orthology biological process
cellular response to DNA damage stimulus Orthology biological process

GO (Orthology)

30 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
transcription export complex Hs cellular component
THO complex Hs cellular component
THO complex part of transcription export complex Hs cellular component
nuclear chromosome, telomeric region Hs cellular component
DNA binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
termination of RNA polymerase II transcription Hs biological process
RNA processing Hs biological process
mRNA processing Hs biological process
RNA export from nucleus Hs biological process
mRNA export from nucleus Hs biological process
apoptotic process Hs biological process
signal transduction Hs biological process
RNA splicing Hs biological process
nuclear matrix Hs cellular component
nuclear speck Hs cellular component
mRNA 3'-end processing Hs biological process
replication fork processing Hs biological process
regulation of DNA-templated transcription, elongation Hs biological process
positive regulation of DNA-templated transcription, elongation Hs biological process
intercellular bridge Hs cellular component
mRNA transport Hs biological process
negative regulation of DNA damage checkpoint Hs biological process

GO (Blast)

14 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
transcription export complex Hs cellular component 574 0.0
THO complex Hs cellular component 574 0.0
THO complex part of transcription export complex Hs cellular component 574 0.0
nuclear chromosome, telomeric region Hs cellular component 574 0.0
DNA binding Hs molecular function 574 0.0
RNA binding Hs molecular function 574 0.0
protein binding Hs molecular function 574 0.0
nucleus Hs cellular component 574 0.0
nucleoplasm Hs cellular component 574 0.0
cytoplasm Hs cellular component 574 0.0
cytosol Hs cellular component 574 0.0
nuclear matrix Hs cellular component 574 0.0
nuclear speck Hs cellular component 574 0.0
intercellular bridge Hs cellular component 574 0.0

GO (InterProScan)

2 results

GO Term Analysis Type e-value
protein binding Pfam molecular function 9.7E-10
signal transduction Pfam biological process 9.7E-10

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