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  1. Gene 'KH2012:KH.C12.44'

Gene Card

Best human hits

POLR2I; POLR3K; ZNRD1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002994

Gene Model ID

KH2012:KH.C12.44

Location

KhC12:2764557..2765859

Transcript Models and Sequences

  KH2012:KH.C12.44.v1.A.SL1-1
KH2012:KH.C12.44.v1.A.SL2-1

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
DNA-dir_RNA_pol-M_15_CS ProSitePatterns DNA-directed RNA polymerase M, 15kDa subunit, conserved site
Rpa12/Rpb9/Rpc10/TFS PIRSF DNA-directed RNA polymerase subunit/transcription factor S
Znf_TFIIS Pfam Zinc finger, TFIIS-type
DNA-dir_RNA_pol_M/15kDasu Pfam DNA-directed RNA polymerase, M/15kDa subunit
Zn_ribbon_RPB9_C CDD Pol II subunit B9, C-terminal zinc ribbon
Znf_TFIIS ProSiteProfiles Zinc finger, TFIIS-type
Znf_TFIIS SMART Zinc finger, TFIIS-type
DNA-dir_RNA_pol_M/15kDasu SMART DNA-directed RNA polymerase, M/15kDa subunit

GOSlim

25 results

GO Term Annotation Origin Type
mRNA splicing, via spliceosome Orthology biological process
nucleic acid binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
cytosol Blast cellular component
transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
transcription initiation from RNA polymerase II promoter Orthology biological process
zinc ion binding Orthology molecular function
RNA metabolic process Orthology biological process
metal ion binding Orthology molecular function
transferase activity, transferring phosphorus-containing groups Orthology molecular function
RNA biosynthetic process Orthology biological process
nucleoplasm part Orthology cellular component
macromolecular complex Orthology cellular component
DNA repair Orthology biological process
mRNA processing Orthology biological process
cell surface receptor signaling pathway Orthology biological process
cellular response to organic substance Orthology biological process
developmental process Orthology biological process
negative regulation of gene expression Orthology biological process
nuclear lumen Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
nuclear part Blast cellular component

GO (Orthology)

22 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
mRNA splicing, via spliceosome Hs biological process
maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter Hs biological process
nucleic acid binding Hs molecular function
DNA-directed 5'-3' RNA polymerase activity Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
DNA-directed RNA polymerase II, core complex Hs cellular component
nucleolus Hs cellular component
transcription-coupled nucleotide-excision repair Hs biological process
transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
transcription initiation from RNA polymerase II promoter Hs biological process
transcription elongation from RNA polymerase II promoter Hs biological process
7-methylguanosine mRNA capping Hs biological process
mRNA cleavage Hs biological process
zinc ion binding Hs molecular function
fibroblast growth factor receptor signaling pathway Hs biological process
RNA metabolic process Hs biological process
somatic stem cell population maintenance Hs biological process
snRNA transcription from RNA polymerase II promoter Hs biological process
metal ion binding Hs molecular function
regulation of gene silencing by miRNA Hs biological process

GO (Blast)

13 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase I activity Hs molecular function 36.2 0.001
RNA polymerase III activity Hs molecular function 52.8 4.78e-10
nucleic acid binding Hs molecular function 216 2.75e-74
DNA-directed 5'-3' RNA polymerase activity Hs molecular function 216 2.75e-74
nucleus Hs cellular component 216 2.75e-74
nucleoplasm Hs cellular component 216 2.75e-74
DNA-directed RNA polymerase II, core complex Hs cellular component 216 2.75e-74
DNA-directed RNA polymerase III complex Hs cellular component 52.8 4.78e-10
nucleolus Hs cellular component 216 2.75e-74
DNA-directed RNA polymerase I complex Hs cellular component 36.2 0.001
cytosol Hs cellular component 52.8 4.78e-10
zinc ion binding Hs molecular function 216 2.75e-74
metal ion binding Hs molecular function 216 2.75e-74

GO (InterProScan)

4 results

GO Term Analysis Type e-value
nucleic acid binding SMART molecular function 2.9E-13
transcription, DNA-templated PIRSF biological process 7.1E-21
mRNA cleavage CDD biological process 3.9443E-29
zinc ion binding SMART molecular function 2.9E-13

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