Aniseed - Gene card

Gene Card

Best human hits

RPS4X; RPS4Y1; RPS4Y2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002718

Gene Model ID

KH2012:KH.C12.188

Location

KhC12:398591..403095

Transcript Models and Sequences

KH2012:KH.C12.188.v1.A.nonSL1-1
KH2012:KH.C12.188.v1.A.nonSL4-1
KH2012:KH.C12.188.v1.A.nonSL5-1
KH2012:KH.C12.188.v1.A.nonSL6-1
KH2012:KH.C12.188.v1.A.nonSL7-1
KH2012:KH.C12.188.v2.A.nonSL1-1
KH2012:KH.C12.188.v2.A.nonSL4-1
KH2012:KH.C12.188.v2.A.nonSL5-1
KH2012:KH.C12.188.v2.A.nonSL6-1
KH2012:KH.C12.188.v2.A.nonSL7-1
KH2012:KH.C12.188.v3.A.nonSL3-1
KH2012:KH.C12.188.v3.A.SL2-1
KH2012:KH.C12.188.v4.A.nonSL3-1
KH2012:KH.C12.188.v4.A.SL2-1

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000007592
ENSEMBL	ENSCING00000011298
NCBI Reference Sequence	XM_009862076.2
NCBI Reference Sequence	XM_009862077.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

3 results

ciad010j15

Plate: R1CiGC02c23

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

14 results

IPR Term	Analysis	Definition
S4_RNA-bd	CDD	RNA-binding S4 domain
Ribosomal_S4e_central_sf	Gene3D	Ribosomal protein S4e, central domain superfamily
Ribosomal_S4e	PIRSF	Ribosomal protein S4e
Ribosomal_S4e_central_region	Pfam	Ribosomal protein S4e, central region
Ribosomal_S4e	Hamap	Ribosomal protein S4e
S4_RNA-bd	Pfam	RNA-binding S4 domain
40S_S4_C	Pfam	40S ribosomal protein S4, C-terminal domain
KOW	Pfam	KOW
Ribosomal_S4e	PANTHER	Ribosomal protein S4e
Ribosomal_S4e_central_region	ProDom	Ribosomal protein S4e, central region
Ribosomal_S4e_N	Pfam	Ribosomal protein S4e, N-terminal
S4_RNA-bd	ProSiteProfiles	RNA-binding S4 domain
Ribosomal_S4e_N_CS	ProSitePatterns	Ribosomal protein S4e, N-terminal, conserved site
Rib_L2_dom2	Gene3D	Ribosomal protein L2, domain 2

GOSlim

23 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
focal adhesion	Orthology	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
multicellular organism development	Orthology	biological process
positive regulation of cell proliferation	Orthology	biological process
membrane	Orthology	cellular component
extracellular exosome	Orthology	cellular component
macromolecular complex	Orthology	cellular component
RNA processing	Orthology	biological process
intracellular organelle part	Orthology	cellular component
cytoplasmic part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
positive regulation of gene expression	Orthology	biological process

GO (Orthology)

26 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
RNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
polysome	Hs	cellular component
focal adhesion	Hs	cellular component
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
multicellular organism development	Hs	biological process
positive regulation of cell proliferation	Hs	biological process
small ribosomal subunit	Hs	cellular component
membrane	Hs	cellular component
rRNA binding	Hs	molecular function
cytosolic small ribosomal subunit	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
cytoplasmic ribonucleoprotein granule	Hs	cellular component
positive regulation of translation	Hs	biological process
extracellular exosome	Hs	cellular component

GO (Blast)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	429	5.83e-154
structural constituent of ribosome	Hs	molecular function	429	5.83e-154
protein binding	Hs	molecular function	429	5.83e-154
intracellular	Hs	cellular component	429	5.83e-154
nucleus	Hs	cellular component	424	2.70e-152
nucleoplasm	Hs	cellular component	429	5.83e-154
cytoplasm	Hs	cellular component	429	5.83e-154
cytosol	Hs	cellular component	429	5.83e-154
ribosome	Hs	cellular component	429	5.83e-154
polysome	Hs	cellular component	429	5.83e-154
focal adhesion	Hs	cellular component	429	5.83e-154
small ribosomal subunit	Hs	cellular component	429	5.83e-154
membrane	Hs	cellular component	429	5.83e-154
rRNA binding	Hs	molecular function	429	5.83e-154
cytosolic small ribosomal subunit	Hs	cellular component	429	5.83e-154
intracellular ribonucleoprotein complex	Hs	cellular component	429	5.83e-154
cytoplasmic ribonucleoprotein granule	Hs	cellular component	429	5.83e-154
extracellular exosome	Hs	cellular component	429	5.83e-154

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
RNA binding	Pfam	molecular function	2.1E-5
structural constituent of ribosome	PANTHER	molecular function	3.8E-143
intracellular	PANTHER	cellular component	3.8E-143
ribosome	PANTHER	cellular component	3.8E-143
translation	PANTHER	biological process	3.8E-143