Aniseed - Gene card

Gene Card

Best human hits

ATG2A; ATG2B; VPS13C

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002654

Gene Model ID

KH2012:KH.C12.128

Location

KhC12:89926..105846

Transcript Models and Sequences

KH2012:KH.C12.128.v1.A.SL1-1
KH2012:KH.C12.128.v2.A.SL2-1

External Database Gene Card

External database links

1 result

Database	Gene ID
NCBI Reference Sequence	XM_004226664.3

Collections

Gateway full ORF

2 results

cien226883

Plate: VES105_E07

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
ATG2	PANTHER	Autophagy-related protein 2
Autophagy-rel_C	Pfam	Autophagy-related, C-terminal
VPS13_N	Pfam	Vacuolar protein sorting-associated protein 13, N-terminal domain
ATG2_CAD_motif	Pfam	Autophagy-related protein 2 CAD motif

GOSlim

19 results

GO Term	Annotation Origin	Type
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Blast	cellular component
mitochondrion	Blast	cellular component
cytosol	Orthology	cellular component
membrane	Orthology	cellular component
intracellular membrane-bounded organelle	Orthology	cellular component
extracellular exosome	Blast	cellular component
ubiquitin-like protein transferase activity	Orthology	molecular function
ligase activity	Orthology	molecular function
peptidase activity, acting on L-amino acid peptides	Orthology	molecular function
cytoplasmic part	Orthology	cellular component
organelle organization	Orthology	biological process
intracellular non-membrane-bounded organelle	Orthology	cellular component
membrane part	Orthology	cellular component
whole membrane	Orthology	cellular component
mitochondrial membrane	Blast	cellular component
bounding membrane of organelle	Blast	cellular component

GO (Orthology)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
autophagosome assembly	Hs	biological process
pre-autophagosomal structure	Hs	cellular component
autophagy of mitochondrion	Hs	biological process
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
lipid droplet	Hs	cellular component
cytosol	Hs	cellular component
autophagy	Hs	biological process
membrane	Hs	cellular component
extrinsic component of membrane	Hs	cellular component
pre-autophagosomal structure membrane	Hs	cellular component
intracellular membrane-bounded organelle	Hs	cellular component
autophagy of nucleus	Hs	biological process

GO (Blast)