Aniseed - Gene card

Gene 'KH2012:KH.C12.118'

Gene Card

Best human hits

FBXL2; FBXL20; FBXL4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002643

Gene Model ID

KH2012:KH.C12.118

Location

KhC12:4122238..4127679

Transcript Models and Sequences

KH2012:KH.C12.118.v1.A.SL1-1

External Database Gene Card

External database links

No result

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

ciad073l08

Plate: R1CiGC07c22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
Leu-rich_rpt_Cys-con_subtyp	SMART	Leucine-rich repeat, cysteine-containing subtype
LRR_dom_sf	Gene3D	Leucine-rich repeat domain superfamily
F-box-like_dom_sf	SUPERFAMILY	F-box-like domain superfamily
F-box_dom	Pfam	F-box domain
F-box_dom	ProSiteProfiles	F-box domain

GOSlim

17 results

GO Term	Annotation Origin	Type
protein polyubiquitination	Orthology	biological process
ubiquitin-protein transferase activity	Orthology	molecular function
protein binding	Orthology	molecular function
calmodulin binding	Blast	molecular function
nucleus	Orthology	cellular component
cytoplasm	Orthology	cellular component
mitochondrion	Orthology	cellular component
cytosol	Orthology	cellular component
cellular protein modification process	Orthology	biological process
proteolysis	Orthology	biological process
membrane	Blast	cellular component
nuclear speck	Orthology	cellular component
intracellular part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
mitochondrial envelope	Orthology	cellular component
intracellular organelle lumen	Orthology	cellular component
enzyme binding	Blast	molecular function

GO (Orthology)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
ubiquitin ligase complex	Hs	cellular component
protein polyubiquitination	Hs	biological process
ubiquitin-protein transferase activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
mitochondrion	Hs	cellular component
mitochondrial intermembrane space	Hs	cellular component
cytosol	Hs	cellular component
ubiquitin-dependent protein catabolic process	Hs	biological process
nuclear speck	Hs	cellular component
post-translational protein modification	Hs	biological process

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
ubiquitin ligase complex	Hs	cellular component	420	2.12e-139
ubiquitin-protein transferase activity	Hs	molecular function	420	2.12e-139
protein binding	Hs	molecular function	420	2.12e-139
calmodulin binding	Hs	molecular function	97.8	1.10e-21
nucleus	Hs	cellular component	420	2.12e-139
cytoplasm	Hs	cellular component	420	2.12e-139
mitochondrion	Hs	cellular component	420	2.12e-139
mitochondrial intermembrane space	Hs	cellular component	420	2.12e-139
cytosol	Hs	cellular component	420	2.12e-139
membrane	Hs	cellular component	97.8	1.10e-21
nuclear speck	Hs	cellular component	420	2.12e-139
SCF ubiquitin ligase complex	Hs	cellular component	97.8	1.10e-21
protein phosphatase binding	Hs	molecular function	97.8	1.10e-21
phosphatidylinositol 3-kinase regulatory subunit binding	Hs	molecular function	97.8	1.10e-21

GO (InterProScan)