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GENE CARD

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  1. Gene 'KH2012:KH.C11.689'

Gene Card

Best human hits

ALX4; VSX1; VSX2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002541

Gene Model ID

KH2012:KH.C11.689

Location

KhC11:4100492..4103663

Transcript Models and Sequences

  KH2012:KH.C11.689.v1.B.SL1-1

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

3 results

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
CVC ProSiteProfiles CVC domain
Homeobox_dom Pfam Homeobox domain
Homeobox_CS ProSitePatterns Homeobox, conserved site
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily
Homeobox_dom SMART Homeobox domain
Homeobox_dom ProSiteProfiles Homeobox domain
Homeobox_dom CDD Homeobox domain

GOSlim

20 results

GO Term Annotation Origin Type
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Blast molecular function
DNA binding Orthology molecular function
chromatin binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
nucleus Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
multicellular organism development Orthology biological process
visual perception Orthology biological process
sequence-specific DNA binding Orthology molecular function
transcription regulatory region DNA binding Orthology molecular function
protein heterodimerization activity Blast molecular function
neuron development Orthology biological process
response to stimulus Orthology biological process
intracellular part Blast cellular component
macromolecular complex Blast cellular component
protein binding Blast molecular function

GO (Orthology)

14 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
DNA binding Hs molecular function
chromatin binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
nucleus Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
multicellular organism development Hs biological process
visual perception Hs biological process
sequence-specific DNA binding Hs molecular function
transcription regulatory region DNA binding Hs molecular function
neuron development Hs biological process
response to stimulus Hs biological process

GO (Blast)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 95.5 1.08e-22
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 128 3.22e-35
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 95.5 1.08e-22
DNA binding Hs molecular function 128 3.22e-35
chromatin binding Hs molecular function 127 6.41e-35
transcription factor activity, sequence-specific DNA binding Hs molecular function 127 6.41e-35
nucleus Hs cellular component 128 3.22e-35
transcription factor complex Hs cellular component 95.5 1.08e-22
sequence-specific DNA binding Hs molecular function 128 3.22e-35
transcription regulatory region DNA binding Hs molecular function 127 6.41e-35
protein heterodimerization activity Hs molecular function 95.5 1.08e-22
HMG box domain binding Hs molecular function 95.5 1.08e-22

GO (InterProScan)

3 results

GO Term Analysis Type e-value
DNA binding SUPERFAMILY molecular function 1.84E-24
regulation of transcription, DNA-templated ProSitePatterns biological process
sequence-specific DNA binding ProSitePatterns molecular function

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