Aniseed - Gene card

Gene 'KH2012:KH.C11.608'

Gene Card

Best human hits

IRX3; IRX4; IRX6

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002455

Gene Model ID

KH2012:KH.C11.608

Location

KhC11:1444265..1452905

Transcript Models and Sequences

KH2012:KH.C11.608.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000018956
NCBI Reference Sequence	NM_001078278.1

Collections

Gene collection 1 (N. Satoh)

1 result

ciad074p13

Plate: R1CiGC07m04

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
Homeobox_CS	ProSitePatterns	Homeobox, conserved site
Homeobox_dom	ProSiteProfiles	Homeobox domain
Homeobox_dom	CDD	Homeobox domain
Homeobox-like_sf	SUPERFAMILY	Homeobox-like domain superfamily
Homeobox_KN_domain	Pfam	Homeobox KN domain
Homeobox_dom	SMART	Homeobox domain

GOSlim

19 results

GO Term	Annotation Origin	Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
DNA binding	Orthology	molecular function
nucleus	Orthology	cellular component
cytoplasm	Blast	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
axon	Blast	cellular component
sequence-specific DNA binding	Orthology	molecular function
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
visual perception	Orthology	biological process
regulation of gene expression	Orthology	biological process
cell development	Orthology	biological process
response to stimulus	Orthology	biological process
small molecule binding	Orthology	molecular function
organic cyclic compound binding	Orthology	molecular function
reproductive process	Orthology	biological process
animal organ development	Orthology	biological process
anatomical structure morphogenesis	Orthology	biological process

GO (Orthology)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
DNA binding	Hs	molecular function
nucleus	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
sequence-specific DNA binding	Hs	molecular function
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function
regulation of heart rate	Hs	biological process
vitamin D binding	Hs	molecular function
visual perception	Hs	biological process
gonad development	Hs	biological process
regulation of gene expression	Hs	biological process
cell development	Hs	biological process
embryonic cranial skeleton morphogenesis	Hs	biological process
response to stimulus	Hs	biological process

GO (Blast)

6 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	176	5.43e-49
DNA binding	Hs	molecular function	176	5.43e-49
nucleus	Hs	cellular component	176	5.43e-49
cytoplasm	Hs	cellular component	146	3.96e-38
axon	Hs	cellular component	146	3.96e-38
sequence-specific DNA binding	Hs	molecular function	176	5.43e-49

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
DNA binding	SUPERFAMILY	molecular function	9.84E-17
regulation of transcription, DNA-templated	Pfam	biological process	1.7E-14
sequence-specific DNA binding	ProSitePatterns	molecular function