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GENE CARD

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  1. Gene 'KH2012:KH.C11.439'

Gene Card

Best human hits

CLVS1; RLBP1; TTPAL

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002272

Gene Model ID

KH2012:KH.C11.439

Location

KhC11:2434187..2439029

Transcript Models and Sequences

  KH2012:KH.C11.439.v1.A.ND2-1
KH2012:KH.C11.439.v1.A.nonSL1-1

External Database Gene Card

External database links

1 result

Database Gene ID
NCBI Reference Sequence XM_002127791.2
Collections

Gene collection 1 (N. Satoh)

2 results

cilv037n16

Plate: R1CiGC28g21

cilv021j03

Plate: R1CiGC26j04

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

1 results

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term Analysis Definition
CRAL/TRIO_N_dom_sf SUPERFAMILY CRAL/TRIO, N-terminal domain superfamily
CRAL-TRIO_dom ProSiteProfiles CRAL-TRIO lipid binding domain
CRAL-TRIO_dom_sf Gene3D CRAL-TRIO lipid binding domain superfamily
CRAL-TRIO_dom SMART CRAL-TRIO lipid binding domain
CRAL/TRIO_N_dom SMART CRAL/TRIO, N-terminal domain
CRAL/TRIO_N_dom Pfam CRAL/TRIO, N-terminal domain
RLBP1 PANTHER Retinaldehyde-binding protein 1
CRAL-TRIO_dom Pfam CRAL-TRIO lipid binding domain
CRAL-TRIO_dom_sf SUPERFAMILY CRAL-TRIO lipid binding domain superfamily
CRAL-TRIO_dom CDD CRAL-TRIO lipid binding domain

GOSlim

20 results

GO Term Annotation Origin Type
cytoplasm Orthology cellular component
endosome Blast cellular component
Golgi apparatus Blast cellular component
cytosol Orthology cellular component
visual perception Orthology biological process
membrane Blast cellular component
cytoplasmic vesicle Blast cellular component
cell body Orthology cellular component
response to stimulus Orthology biological process
cellular metabolic process Orthology biological process
organic substance metabolic process Orthology biological process
small molecule binding Orthology molecular function
Golgi apparatus part Blast cellular component
binding Blast molecular function
whole membrane Blast cellular component
intracellular organelle part Blast cellular component
early endosome Blast cellular component
bounding membrane of organelle Blast cellular component
Golgi membrane Blast cellular component
anion binding Blast molecular function

GO (Orthology)

10 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
retinoid metabolic process Hs biological process
11-cis retinal binding Hs molecular function
cytoplasm Hs cellular component
cytosol Hs cellular component
vitamin A metabolic process Hs biological process
visual perception Hs biological process
retinal binding Hs molecular function
retinol binding Hs molecular function
cell body Hs cellular component
response to stimulus Hs biological process

GO (Blast)

16 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
11-cis retinal binding Hs molecular function 279 2.65e-93
cytoplasm Hs cellular component 279 2.65e-93
endosome Hs cellular component 174 5.25e-52
Golgi apparatus Hs cellular component 174 5.25e-52
trans-Golgi network Hs cellular component 174 5.25e-52
cytosol Hs cellular component 279 2.65e-93
lipid binding Hs molecular function 174 5.25e-52
membrane Hs cellular component 174 5.25e-52
retinal binding Hs molecular function 279 2.65e-93
retinol binding Hs molecular function 279 2.65e-93
clathrin-coated vesicle Hs cellular component 174 5.25e-52
cytoplasmic vesicle Hs cellular component 174 5.25e-52
early endosome membrane Hs cellular component 174 5.25e-52
trans-Golgi network membrane Hs cellular component 174 5.25e-52
cell body Hs cellular component 279 2.65e-93
phosphatidylinositol-3,5-bisphosphate binding Hs molecular function 174 5.25e-52

GO (InterProScan)

2 results

GO Term Analysis Type e-value
visual perception PANTHER biological process 4.7E-128
retinal binding PANTHER molecular function 4.7E-128

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