Aniseed - Gene card

Gene Card

Best human hits

KCMF1; MIB1; MIB2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002209

Gene Model ID

KH2012:KH.C11.380

Location

KhC11:2977039..2992275

Transcript Models and Sequences

KH2012:KH.C11.380.v1.A.SL2-1
KH2012:KH.C11.380.v1.R.ND1-1
KH2012:KH.C11.380.v2.A.SL2-1
KH2012:KH.C11.380.v2.R.ND1-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000018235
NCBI Reference Sequence	NM_001128892.1

Collections

Gene collection 1 (N. Satoh)

1 result

citb048f16

Plate: R1CiGC45b12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
Mib_Herc2	Pfam	Mib-herc2
Znf_ZZ	SMART	Zinc finger, ZZ-type
Mib_Herc2	ProSiteProfiles	Mib-herc2
Mib_Herc2_sf	SUPERFAMILY	Mib/herc2 domain superfamily
Znf_ZZ	Pfam	Zinc finger, ZZ-type
Mib_Herc2_sf	Gene3D	Mib/herc2 domain superfamily
Znf_ZZ	ProSiteProfiles	Zinc finger, ZZ-type
Znf_ZZ	ProSitePatterns	Zinc finger, ZZ-type

GOSlim

28 results

GO Term	Annotation Origin	Type
nucleic acid binding	Blast	molecular function
actin binding	Blast	molecular function
ubiquitin-protein transferase activity	Blast	molecular function
signal transducer activity	Blast	molecular function
protein binding	Blast	molecular function
extracellular region	Blast	cellular component
cytoplasm	Blast	cellular component
endosome	Blast	cellular component
early endosome	Blast	cellular component
centrosome	Blast	cellular component
microtubule organizing center	Blast	cellular component
cytosol	Blast	cellular component
cytoskeleton	Blast	cellular component
plasma membrane	Blast	cellular component
zinc ion binding	Blast	molecular function
membrane	Blast	cellular component
protein ubiquitination	InterProScan	biological process
transferase activity	Blast	molecular function
cytoplasmic vesicle	Blast	cellular component
metal ion binding	Blast	molecular function
intracellular part	Blast	cellular component
macromolecular complex	Blast	cellular component
organelle	Blast	cellular component
postsynapse	Blast	cellular component
neuron part	Blast	cellular component
intracellular organelle part	Blast	cellular component
endomembrane system	Blast	cellular component
intracellular organelle lumen	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

23 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
ubiquitin ligase complex	Hs	cellular component	202	5.02e-58
nucleic acid binding	Hs	molecular function	61.2	2.06e-10
actin binding	Hs	molecular function	202	5.02e-58
ubiquitin-protein transferase activity	Hs	molecular function	202	5.02e-58
signal transducer activity	Hs	molecular function	202	5.02e-58
protein binding	Hs	molecular function	202	5.02e-58
extracellular region	Hs	cellular component	61.2	2.06e-10
cytoplasm	Hs	cellular component	202	5.02e-58
endosome	Hs	cellular component	202	5.02e-58
early endosome	Hs	cellular component	202	5.02e-58
centrosome	Hs	cellular component	199	6.76e-57
microtubule organizing center	Hs	cellular component	199	6.76e-57
cytosol	Hs	cellular component	202	5.02e-58
cytoskeleton	Hs	cellular component	199	6.76e-57
plasma membrane	Hs	cellular component	199	6.76e-57
zinc ion binding	Hs	molecular function	202	5.02e-58
postsynaptic density	Hs	cellular component	199	6.76e-57
membrane	Hs	cellular component	199	6.76e-57
transferase activity	Hs	molecular function	202	5.02e-58
cytoplasmic vesicle	Hs	cellular component	199	6.76e-57
metal ion binding	Hs	molecular function	202	5.02e-58
ubiquitin protein ligase activity	Hs	molecular function	202	5.02e-58
ficolin-1-rich granule lumen	Hs	cellular component	61.2	2.06e-10

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
ubiquitin-protein transferase activity	Pfam	molecular function	1.2E-19
zinc ion binding	Pfam	molecular function	1.9E-5
protein ubiquitination	Pfam	biological process	1.2E-19
metal ion binding	Pfam	molecular function	1.2E-19