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GENE CARD

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  1. EST 'BW302596' > 
  2. Clone 'cima827142' > 
  3. Gene 'KH2012:KH.C11.372'

Gene Card

Best human hits

PCM1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00002200

Gene Model ID

KH2012:KH.C11.372

Location

KhC11:596845..604519

Transcript Models and Sequences

  KH2012:KH.C11.372.v1.A.SL2-1
KH2012:KH.C11.372.v1.R.ND1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000020877
ENSEMBL ENSCING00000024878
Collections

Gateway full ORF

2 results

cien70926

Plate: VES81_E11

cien213081

Plate: VES103_O07

Gene collection 1 (N. Satoh)

5 results

cieg007j01

Plate: R1CiGC16j07

cieg011b03

Plate: R1CiGC17e02

citb040n08

Plate: R1CiGC32n10

cicl041m14

Plate: R1CiGC12j03

citb103f18

Plate: R1CiGC47a03

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

2 results

IPR Term Analysis Definition
PCM1_C Pfam Pericentriolar material 1 protein, C-terminal
Pericentriolar_Pcm1 PANTHER Pericentriolar material 1 protein

GOSlim

29 results

GO Term Annotation Origin Type
G2/M transition of mitotic cell cycle Orthology biological process
protein binding Orthology molecular function
cytoplasm Orthology cellular component
centrosome Orthology cellular component
microtubule organizing center Orthology cellular component
cytosol Orthology cellular component
cytoskeleton Orthology cellular component
membrane Orthology cellular component
cell projection organization Orthology biological process
nuclear membrane Orthology cellular component
macromolecular complex Orthology cellular component
identical protein binding Orthology molecular function
cell projection Orthology cellular component
apical part of cell Orthology cellular component
cell migration Orthology biological process
generation of neurons Orthology biological process
cytoplasmic part Orthology cellular component
microtubule-based process Orthology biological process
organelle organization Orthology biological process
brain development Orthology biological process
cell proliferation Orthology biological process
intracellular transport Orthology biological process
organelle part Orthology cellular component
cell projection part Orthology cellular component
plasma membrane region Orthology cellular component
cell development Orthology biological process
protein localization to organelle Orthology biological process
intracellular protein transport Orthology biological process
developmental process Orthology biological process

GO (Orthology)

34 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
G2/M transition of mitotic cell cycle Hs biological process
pericentriolar material Hs cellular component
neuron migration Hs biological process
protein binding Hs molecular function
cytoplasm Hs cellular component
centrosome Hs cellular component
centriole Hs cellular component
microtubule organizing center Hs cellular component
cytosol Hs cellular component
cytoskeleton Hs cellular component
centrosome cycle Hs biological process
regulation of G2/M transition of mitotic cell cycle Hs biological process
membrane Hs cellular component
interkinetic nuclear migration Hs biological process
cell projection organization Hs biological process
cytoplasmic microtubule organization Hs biological process
nuclear membrane Hs cellular component
macromolecular complex Hs cellular component
centriolar satellite Hs cellular component
microtubule anchoring Hs biological process
microtubule anchoring at centrosome Hs biological process
social behavior Hs biological process
intraciliary transport involved in cilium assembly Hs biological process
ciliary transition zone Hs cellular component
ciliary basal body Hs cellular component
identical protein binding Hs molecular function
cell projection Hs cellular component
apical part of cell Hs cellular component
negative regulation of neurogenesis Hs biological process
cilium assembly Hs biological process
protein localization to centrosome Hs biological process
positive regulation of intracellular protein transport Hs biological process
neuronal stem cell population maintenance Hs biological process
non-motile cilium assembly Hs biological process

GO (Blast)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
pericentriolar material Hs cellular component 189 1.67e-48
protein binding Hs molecular function 189 1.67e-48
cytoplasm Hs cellular component 189 1.67e-48
centrosome Hs cellular component 189 1.67e-48
centriole Hs cellular component 189 1.67e-48
microtubule organizing center Hs cellular component 189 1.67e-48
cytosol Hs cellular component 189 1.67e-48
cytoskeleton Hs cellular component 189 1.67e-48
membrane Hs cellular component 189 1.67e-48
nuclear membrane Hs cellular component 189 1.67e-48
macromolecular complex Hs cellular component 189 1.67e-48
centriolar satellite Hs cellular component 189 1.67e-48
ciliary transition zone Hs cellular component 189 1.67e-48
ciliary basal body Hs cellular component 189 1.67e-48
identical protein binding Hs molecular function 189 1.67e-48
cell projection Hs cellular component 189 1.67e-48
apical part of cell Hs cellular component 189 1.67e-48

GO (InterProScan)

4 results

GO Term Analysis Type e-value
centrosome PANTHER cellular component 5.1E-124
microtubule anchoring at centrosome PANTHER biological process 5.1E-124
cilium assembly PANTHER biological process 5.1E-124
protein localization to centrosome PANTHER biological process 5.1E-124

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