Aniseed - Gene card

Gene 'KH2012:KH.C10.598'

Gene Card

Best human hits

ZBTB14; ZNF556; ZSCAN31

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001831

Gene Model ID

KH2012:KH.C10.598

Location

KhC10:1528985..1544742

Transcript Models and Sequences

KH2012:KH.C10.598.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000008291
NCBI Reference Sequence	XM_002123332.4

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

2 results

cieg050p13

Plate: R1CiGC23p11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
Znf_C2H2_type	ProSiteProfiles	Zinc finger C2H2-type
Znf_C2H2_type	ProSitePatterns	Zinc finger C2H2-type
Znf_C2H2_sf	SUPERFAMILY	Zinc finger C2H2 superfamily
Znf_C2H2_type	SMART	Zinc finger C2H2-type

GOSlim

15 results

GO Term	Annotation Origin	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
nucleic acid binding	Blast	molecular function
DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
protein binding	Blast	molecular function
intracellular	Blast	cellular component
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
nucleolus	Blast	cellular component
cytosol	Blast	cellular component
sequence-specific DNA binding	Blast	molecular function
transcription regulatory region DNA binding	Blast	molecular function
metal ion binding	Blast	molecular function
intracellular part	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	102	5.14e-23
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	102	5.14e-23
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	102	5.14e-23
nucleic acid binding	Hs	molecular function	106	3.77e-24
DNA binding	Hs	molecular function	106	3.77e-24
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	102	5.14e-23
protein binding	Hs	molecular function	102	5.14e-23
intracellular	Hs	cellular component	106	3.77e-24
nucleus	Hs	cellular component	106	3.77e-24
nucleoplasm	Hs	cellular component	102	5.14e-23
nucleolus	Hs	cellular component	102	5.14e-23
cytosol	Hs	cellular component	102	5.14e-23
aggresome	Hs	cellular component	102	5.14e-23
sequence-specific DNA binding	Hs	molecular function	102	5.14e-23
transcription regulatory region DNA binding	Hs	molecular function	102	5.14e-23
metal ion binding	Hs	molecular function	106	3.77e-24

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	SMART	molecular function	6.9E-4