Aniseed - Gene card

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Gene 'KH2012:KH.C10.530'

Gene Card

Best human hits

CIZ1; RBM20; ZNF638

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001758

Gene Model ID

KH2012:KH.C10.530

Location

KhC10:1601503..1608569

Transcript Models and Sequences

KH2012:KH.C10.530.v1.A.ND1-1

External Database Gene Card

External database links

5 results

Database	Gene ID
ENSEMBL	ENSCING00000014023
NCBI Reference Sequence	NM_001129861.1
NCBI Reference Sequence	XM_009861627.2
NCBI Reference Sequence	XM_009861628.2
NCBI Reference Sequence	XM_018813567.1

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

2 results

cieg068n18

Plate: R1CiGC40i07

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
CIZ1	PANTHER	Cip1-interacting zinc finger protein
Znf_C2H2_sf	SUPERFAMILY	Zinc finger C2H2 superfamily
Znf_C2H2_type	ProSitePatterns	Zinc finger C2H2-type
Matrin/U1-like-C_Znf_C2H2	SMART	Matrin/U1-C-like, C2H2-type zinc finger
Matrin/U1-C_Znf_C2H2	ProSiteProfiles	Matrin/U1-C, C2H2-type zinc finger

GOSlim

13 results

GO Term	Annotation Origin	Type
nucleic acid binding	Blast	molecular function
DNA binding	Blast	molecular function
double-stranded DNA binding	Blast	molecular function
RNA binding	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Blast	cellular component
plasma membrane	Blast	cellular component
zinc ion binding	Blast	molecular function
nuclear speck	Blast	cellular component
intracellular membrane-bounded organelle	Blast	cellular component
metal ion binding	Blast	molecular function

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	58.5	9.55e-09
DNA binding	Hs	molecular function	42.7	0.001
double-stranded DNA binding	Hs	molecular function	42.7	0.001
RNA binding	Hs	molecular function	42.7	0.001
protein binding	Hs	molecular function	58.5	9.55e-09
nucleus	Hs	cellular component	58.5	9.55e-09
nucleoplasm	Hs	cellular component	58.5	9.55e-09
cytoplasm	Hs	cellular component	42.7	0.001
plasma membrane	Hs	cellular component	58.5	9.55e-09
zinc ion binding	Hs	molecular function	58.5	9.55e-09
nuclear speck	Hs	cellular component	42.7	0.001
cyclin binding	Hs	molecular function	58.5	9.55e-09
intracellular membrane-bounded organelle	Hs	cellular component	42.7	0.001
metal ion binding	Hs	molecular function	58.5	9.55e-09

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
nucleic acid binding	SMART	molecular function	0.2
nucleus	ProSiteProfiles	cellular component	8.9
zinc ion binding	SMART	molecular function	0.2