Gene Card
Best human hits
PRG4; SBSPON; SPON1
Unique Gene ID
Cirobu.g00001583
Gene Model ID
KH2012:KH.C10.368
Location
KhC10:2216657..2227579
Transcript Models and Sequences
Gateway full ORF
1 result
cien115166
Plate: VES88_O07
Gene collection 1 (N. Satoh)
1 result
cilv041m06
Plate: R1CiGC28m20
n/a
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The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
8 results
| IPR Term | Analysis | Definition |
|---|---|---|
| TSP1_rpt | SMART | Thrombospondin type-1 (TSP1) repeat |
| TSP1_rpt | Pfam | Thrombospondin type-1 (TSP1) repeat |
| TSP1_rpt_sf | Gene3D | Thrombospondin type-1 (TSP1) repeat superfamily |
| TSP1_rpt | ProSiteProfiles | Thrombospondin type-1 (TSP1) repeat |
| Somatomedin_B_dom | ProSitePatterns | Somatomedin B domain |
| Somatomedin_B_dom | ProSiteProfiles | Somatomedin B domain |
| TSP1_rpt_sf | SUPERFAMILY | Thrombospondin type-1 (TSP1) repeat superfamily |
| Somatomedin_B-like_dom_sf | SUPERFAMILY | Somatomedin B-like domain superfamily |
GOSlim
10 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| protein binding | Blast | molecular function |
| extracellular region | Blast | cellular component |
| extracellular space | Blast | cellular component |
| endoplasmic reticulum lumen | Blast | cellular component |
| immune response | InterProScan | biological process |
| metal ion binding | Blast | molecular function |
| membrane organization | Blast | biological process |
| organelle organization | Blast | biological process |
| binding | Blast | molecular function |
| extracellular region part | Blast | cellular component |
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|
GO (Blast)
9 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| scavenger receptor activity | Hs | molecular function | 91.7 | 6.01e-22 |
| protein binding | Hs | molecular function | 48.1 | 2.94e-06 |
| extracellular region | Hs | cellular component | 91.7 | 6.01e-22 |
| proteinaceous extracellular matrix | Hs | cellular component | 91.7 | 6.01e-22 |
| extracellular space | Hs | cellular component | 48.1 | 2.94e-06 |
| endoplasmic reticulum lumen | Hs | cellular component | 48.1 | 2.94e-06 |
| polysaccharide binding | Hs | molecular function | 91.7 | 6.01e-22 |
| extracellular matrix | Hs | cellular component | 91.7 | 6.01e-22 |
| metal ion binding | Hs | molecular function | 48.1 | 2.94e-06 |
GO (InterProScan)
3 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| scavenger receptor activity | SUPERFAMILY | molecular function | 2.35E-6 |
| immune response | SUPERFAMILY | biological process | 2.35E-6 |
| polysaccharide binding | SUPERFAMILY | molecular function | 2.35E-6 |
