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GENE CARD

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  1. Gene 'Phmamm.CG.MTP2014.S1...' > 
  2. Gene 'Haaura.CG.MTP2014.S4...' > 
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Gene Card

Best human hits

TBP; TBPL1; TBPL2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001517

Gene Model ID

KH2012:KH.C10.305

Location

KhC10:226884..230309

Transcript Models and Sequences

  KH2012:KH.C10.305.v1.A.nonSL2-1
KH2012:KH.C10.305.v1.A.nonSL3-1
KH2012:KH.C10.305.v1.A.nonSL4-1
KH2012:KH.C10.305.v1.A.nonSL5-1
KH2012:KH.C10.305.v1.A.nonSL6-1
KH2012:KH.C10.305.v1.A.nonSL7-1
KH2012:KH.C10.305.v1.A.nonSL8-1
KH2012:KH.C10.305.v1.A.nonSL9-1
KH2012:KH.C10.305.v1.R.ND1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000002679
NCBI Reference Sequence XM_002127084.4
Collections

Gateway full ORF

2 results

cima86964

Plate: VES57_D08

cima818931

Plate: VES59_I14

Gene collection 1 (N. Satoh)

3 results

cicl054h07

Plate: R1CiGC14m18

ciad015o04

Plate: R1CiGC02l17

cicl092e10

Plate: R1CiGC39f07

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
TBP Pfam TATA-box binding protein
TBP PRINTS TATA-box binding protein
TBP_eukaryotic CDD TATA-box binding protein, eukaryotic
TBP_dom_sf Gene3D TBP domain superfamily
TBP Hamap TATA-box binding protein
TBP PANTHER TATA-box binding protein
TBP_CS ProSitePatterns TATA-box binding protein, conserved site

GOSlim

27 results

GO Term Annotation Origin Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
core promoter proximal region sequence-specific DNA binding Orthology molecular function
DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcription coactivator activity Blast molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
DNA-templated transcription, initiation Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
transcription initiation from RNA polymerase II promoter Orthology biological process
multicellular organism development Orthology biological process
spermatogenesis Orthology biological process
transcription factor binding Orthology molecular function
enzyme binding Orthology molecular function
macromolecular complex Orthology cellular component
transcription regulatory region DNA binding Orthology molecular function
negative regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription, DNA-templated Orthology biological process
intracellular non-membrane-bounded organelle Orthology cellular component
nuclear lumen Orthology cellular component
nucleoplasm part Orthology cellular component
receptor binding Orthology molecular function
positive regulation of gene expression Orthology biological process

GO (Orthology)

44 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nuclear chromatin Hs cellular component
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase III transcription factor activity, sequence-specific DNA binding Hs molecular function
core promoter binding Hs molecular function
TFIIB-class transcription factor binding Hs molecular function
RNA polymerase II repressing transcription factor binding Hs molecular function
RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly Hs molecular function
female pronucleus Hs cellular component
male pronucleus Hs cellular component
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
transcription factor TFIID complex Hs cellular component
transcription factor TFIIA complex Hs cellular component
nuclear euchromatin Hs cellular component
cytoplasm Hs cellular component
transcription, DNA-templated Hs biological process
DNA-templated transcription, initiation Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase III promoter Hs biological process
termination of RNA polymerase I transcription Hs biological process
transcription from RNA polymerase II promoter Hs biological process
transcription initiation from RNA polymerase II promoter Hs biological process
transcription elongation from RNA polymerase II promoter Hs biological process
transcription from RNA polymerase III promoter Hs biological process
multicellular organism development Hs biological process
spermatogenesis Hs biological process
transcription factor binding Hs molecular function
viral process Hs biological process
aryl hydrocarbon receptor binding Hs molecular function
enzyme binding Hs molecular function
macromolecular complex Hs cellular component
snRNA transcription from RNA polymerase II promoter Hs biological process
transcription regulatory region DNA binding Hs molecular function
pronucleus Hs cellular component
positive regulation of gene expression, epigenetic Hs biological process
negative regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
RNA polymerase II transcriptional preinitiation complex assembly Hs biological process
repressing transcription factor binding Hs molecular function
transcriptional preinitiation complex Hs cellular component

GO (Blast)

29 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nuclear chromatin Hs cellular component 337 6.99e-115
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 337 6.99e-115
core promoter proximal region sequence-specific DNA binding Hs molecular function 337 6.99e-115
RNA polymerase III transcription factor activity, sequence-specific DNA binding Hs molecular function 337 6.99e-115
core promoter binding Hs molecular function 337 6.99e-115
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 125 1.18e-34
TFIIB-class transcription factor binding Hs molecular function 337 6.99e-115
RNA polymerase II repressing transcription factor binding Hs molecular function 337 6.99e-115
RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly Hs molecular function 337 6.99e-115
female pronucleus Hs cellular component 337 6.99e-115
male pronucleus Hs cellular component 337 6.99e-115
DNA binding Hs molecular function 337 6.99e-115
transcription factor activity, sequence-specific DNA binding Hs molecular function 337 6.99e-115
transcription coactivator activity Hs molecular function 125 1.18e-34
protein binding Hs molecular function 337 6.99e-115
nucleus Hs cellular component 337 6.99e-115
nucleoplasm Hs cellular component 337 6.99e-115
transcription factor TFIID complex Hs cellular component 337 6.99e-115
transcription factor TFIIA complex Hs cellular component 337 6.99e-115
nuclear euchromatin Hs cellular component 337 6.99e-115
cytoplasm Hs cellular component 337 6.99e-115
transcription factor binding Hs molecular function 337 6.99e-115
aryl hydrocarbon receptor binding Hs molecular function 337 6.99e-115
enzyme binding Hs molecular function 337 6.99e-115
macromolecular complex Hs cellular component 337 6.99e-115
transcription regulatory region DNA binding Hs molecular function 337 6.99e-115
pronucleus Hs cellular component 337 6.99e-115
repressing transcription factor binding Hs molecular function 337 6.99e-115
transcriptional preinitiation complex Hs cellular component 337 6.99e-115

GO (InterProScan)

2 results

GO Term Analysis Type e-value
DNA binding CDD molecular function 9.30545E-130
DNA-templated transcription, initiation CDD biological process 9.30545E-130

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