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GENE CARD

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Gene Card

Best human hits

ADAMTS9; HMCN1; SEMA5B

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001383

Gene Model ID

KH2012:KH.C10.183

Location

KhC10:3758638..3769847

Transcript Models and Sequences

  KH2012:KH.C10.183.v1.A.SL3-1
KH2012:KH.C10.183.v1.R.ND1-1
KH2012:KH.C10.183.v2.A.SL2-1

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000006253
ENSEMBL ENSCING00000019901
ENSEMBL ENSCING00000022565
Collections

Gene collection 1 (N. Satoh)

2 results

ciad014h15

Plate: R1CiGC02d13

ciad048h21

Plate: R1CiGC05m23

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

12 results

IPR Term Analysis Definition
TSP1_rpt_sf Gene3D Thrombospondin type-1 (TSP1) repeat superfamily
TSP1_rpt_sf SUPERFAMILY Thrombospondin type-1 (TSP1) repeat superfamily
TSP1_rpt ProSiteProfiles Thrombospondin type-1 (TSP1) repeat
Trypsin_dom CDD Serine proteases, trypsin domain
Peptidase_S1_PA SUPERFAMILY Peptidase S1, PA clan
TSP1_rpt SMART Thrombospondin type-1 (TSP1) repeat
EGF_Ca-bd_CS ProSitePatterns EGF-like calcium-binding, conserved site
TSP1_rpt Pfam Thrombospondin type-1 (TSP1) repeat
Trypsin_dom ProSiteProfiles Serine proteases, trypsin domain
Trypsin_dom SMART Serine proteases, trypsin domain
Trypsin_dom Pfam Serine proteases, trypsin domain
cEGF Pfam Complement Clr-like EGF domain

GOSlim

26 results

GO Term Annotation Origin Type
endopeptidase activity Blast molecular function
metalloendopeptidase activity Blast molecular function
calcium ion binding Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
extracellular space Blast cellular component
cytoplasm Blast cellular component
endoplasmic reticulum Blast cellular component
proteolysis InterProScan biological process
peptidase activity Blast molecular function
metallopeptidase activity Blast molecular function
zinc ion binding Blast molecular function
cell surface Blast cellular component
membrane Blast cellular component
integral component of membrane Blast cellular component
hydrolase activity Blast molecular function
cell junction Blast cellular component
intracellular membrane-bounded organelle Blast cellular component
metal ion binding Blast molecular function
extracellular exosome Blast cellular component
serine-type endopeptidase activity InterProScan molecular function
extracellular region part Blast cellular component
cell periphery Blast cellular component
cytoplasmic part Blast cellular component
plasma membrane region Blast cellular component
receptor binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

25 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
endopeptidase activity Hs molecular function 120 2.27e-27
metalloendopeptidase activity Hs molecular function 120 2.27e-27
calcium ion binding Hs molecular function 154 1.11e-37
protein binding Hs molecular function 122 5.76e-28
extracellular region Hs cellular component 154 1.11e-37
proteinaceous extracellular matrix Hs cellular component 154 1.11e-37
basement membrane Hs cellular component 154 1.11e-37
extracellular space Hs cellular component 122 5.76e-28
cytoplasm Hs cellular component 154 1.11e-37
endoplasmic reticulum Hs cellular component 120 2.27e-27
cell cortex Hs cellular component 154 1.11e-37
peptidase activity Hs molecular function 120 2.27e-27
metallopeptidase activity Hs molecular function 120 2.27e-27
zinc ion binding Hs molecular function 120 2.27e-27
cell surface Hs cellular component 120 2.27e-27
membrane Hs cellular component 122 5.76e-28
integral component of membrane Hs cellular component 122 5.76e-28
hydrolase activity Hs molecular function 120 2.27e-27
cell junction Hs cellular component 154 1.11e-37
extracellular matrix Hs cellular component 154 1.11e-37
cleavage furrow Hs cellular component 154 1.11e-37
neuropilin binding Hs molecular function 122 5.76e-28
intracellular membrane-bounded organelle Hs cellular component 120 2.27e-27
metal ion binding Hs molecular function 120 2.27e-27
extracellular exosome Hs cellular component 154 1.11e-37

GO (InterProScan)

3 results

GO Term Analysis Type e-value
calcium ion binding ProSitePatterns molecular function
proteolysis Pfam biological process 5.3E-36
serine-type endopeptidase activity Pfam molecular function 5.3E-36

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