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Gene Card

Best human hits

MEIS1; MEIS2; MEIS3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001373

Gene Model ID

KH2012:KH.C10.174

Location

KhC10:3140162..3170571

Transcript Models and Sequences

  KH2012:KH.C10.174.v1.A.SL2-1
KH2012:KH.C10.174.v1.A.SL3-1
KH2012:KH.C10.174.v1.A.SL4-1
KH2012:KH.C10.174.v2.A.SL1-1
KH2012:KH.C10.174.v3.A.SL5-1

External Database Gene Card

External database links

5 results

Database Gene ID
ENSEMBL ENSCING00000005356
NCBI Reference Sequence NM_001078475.1
NCBI Reference Sequence XM_018813575.1
NCBI Reference Sequence XM_018813576.1
NCBI Reference Sequence XM_018813577.1
Collections

Gateway full ORF

1 result

cien200441

Plate: VES101_H09

Gene collection 1 (N. Satoh)

2 results

citb035l22

Plate: R1CiGC32a16

citb054d11

Plate: R1CiGC45j14

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

11 results

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
Homeobox_dom SMART Homeobox domain
PKNOX/Meis_N Pfam Homeobox protein PKNOX/Meis, N-terminal
Homeobox_dom CDD Homeobox domain
Homeobox_KN_domain Pfam Homeobox KN domain
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily
Homeobox_dom ProSiteProfiles Homeobox domain

GOSlim

37 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
angiogenesis Orthology biological process
DNA binding Orthology molecular function
chromatin binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcription cofactor activity Orthology molecular function
transcription corepressor activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
cytoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
multicellular organism development Orthology biological process
transcription factor binding Orthology molecular function
sequence-specific DNA binding Orthology molecular function
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
protein heterodimerization activity Orthology molecular function
perinuclear region of cytoplasm Orthology cellular component
blood vessel morphogenesis Orthology biological process
animal organ development Orthology biological process
anatomical structure morphogenesis Orthology biological process
intracellular part Orthology cellular component
macromolecular complex Orthology cellular component
nervous system process Orthology biological process
immune system process Orthology biological process
cell development Orthology biological process
cell differentiation Orthology biological process
neuron differentiation Orthology biological process
intracellular signal transduction Orthology biological process
positive regulation of signal transduction Orthology biological process
response to organic substance Orthology biological process
negative regulation of signal transduction Orthology biological process
negative regulation of apoptotic process Orthology biological process

GO (Orthology)

41 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
angiogenesis Hs biological process
eye development Hs biological process
lens morphogenesis in camera-type eye Hs biological process
DNA binding Hs molecular function
chromatin binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function
transcription cofactor activity Hs molecular function
transcription corepressor activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
transcription factor complex Hs cellular component
cytoplasm Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription from RNA polymerase II promoter Hs biological process
multicellular organism development Hs biological process
locomotory behavior Hs biological process
transcription factor binding Hs molecular function
visual learning Hs biological process
response to mechanical stimulus Hs biological process
hemopoiesis Hs biological process
pancreas development Hs biological process
megakaryocyte development Hs biological process
sequence-specific DNA binding Hs molecular function
negative regulation of myeloid cell differentiation Hs biological process
negative regulation of neuron differentiation Hs biological process
positive regulation of mitotic cell cycle Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
protein heterodimerization activity Hs molecular function
perinuclear region of cytoplasm Hs cellular component
blood vessel morphogenesis Hs biological process
positive regulation of protein kinase B signaling Hs biological process
definitive hemopoiesis Hs biological process
response to growth factor Hs biological process
negative regulation of apoptotic signaling pathway Hs biological process

GO (Blast)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 370 1.88e-123
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 370 1.88e-123
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 370 1.88e-123
DNA binding Hs molecular function 370 1.88e-123
chromatin binding Hs molecular function 370 1.88e-123
transcription factor activity, sequence-specific DNA binding Hs molecular function 363 2.15e-120
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 370 1.88e-123
transcription cofactor activity Hs molecular function 363 2.15e-120
transcription corepressor activity Hs molecular function 363 2.15e-120
protein binding Hs molecular function 370 1.88e-123
nucleus Hs cellular component 370 1.88e-123
transcription factor complex Hs cellular component 370 1.88e-123
cytoplasm Hs cellular component 363 2.15e-120
transcription factor binding Hs molecular function 363 2.15e-120
sequence-specific DNA binding Hs molecular function 370 1.88e-123
protein heterodimerization activity Hs molecular function 370 1.88e-123
perinuclear region of cytoplasm Hs cellular component 363 2.15e-120

GO (InterProScan)

2 results

GO Term Analysis Type e-value
DNA binding Pfam molecular function 1.4E-19
regulation of transcription, DNA-templated Pfam biological process 1.4E-19

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