Aniseed - Gene card

Gene Card

Best human hits

RPS19

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001297

Gene Model ID

KH2012:KH.C10.101

Location

KhC10:1087695..1089986

Transcript Models and Sequences

KH2012:KH.C10.101.v1.A.nonSL2-1
KH2012:KH.C10.101.v1.A.nonSL3-1
KH2012:KH.C10.101.v1.A.nonSL5-1
KH2012:KH.C10.101.v1.A.nonSL6-1
KH2012:KH.C10.101.v1.A.nonSL7-1
KH2012:KH.C10.101.v2.A.nonSL10-1
KH2012:KH.C10.101.v2.A.nonSL4-1
KH2012:KH.C10.101.v2.A.nonSL9-1
KH2012:KH.C10.101.v2.A.SL1-1
KH2012:KH.C10.101.v3.A.SL8-1

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000016900
NCBI Reference Sequence	XM_002128869.3
NCBI Reference Sequence	XM_002128918.2
NCBI Reference Sequence	XM_009861571.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg044a09

Plate: R1CiGC22h21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
Ribosomal_S19e	SMART	Ribosomal protein S19e
WH_DNA-bd_sf	SUPERFAMILY	Winged helix DNA-binding domain superfamily
Ribosomal_S19e	Pfam	Ribosomal protein S19e
Ribosomal_S19e_sf	Gene3D	Ribosomal protein S19e domain superfamily
Ribosomal_S19e	PANTHER	Ribosomal protein S19e
Ribosomal_S19e_CS	ProSitePatterns	Ribosomal protein S19e, conserved site
Ribosomal_S19e	ProDom	Ribosomal protein S19e

GOSlim

31 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
focal adhesion	Orthology	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
Notch signaling pathway	Orthology	biological process
membrane	Orthology	cellular component
protein kinase binding	Orthology	molecular function
protein homodimerization activity	Orthology	molecular function
extracellular exosome	Orthology	cellular component
RNA processing	Orthology	biological process
cell migration	Orthology	biological process
immune system process	Orthology	biological process
chemotaxis	Orthology	biological process
organelle organization	Orthology	biological process
intracellular organelle part	Orthology	cellular component
animal organ development	Orthology	biological process
cell differentiation	Orthology	biological process
response to bacterium	Orthology	biological process
defense response	Orthology	biological process
protein oligomerization	Orthology	biological process
immune response	Orthology	biological process

GO (Orthology)

35 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
ribosomal small subunit assembly	Hs	biological process
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Hs	biological process
monocyte chemotaxis	Hs	biological process
RNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
focal adhesion	Hs	cellular component
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
nucleolus organization	Hs	biological process
Notch signaling pathway	Hs	biological process
membrane	Hs	cellular component
fibroblast growth factor binding	Hs	molecular function
protein kinase binding	Hs	molecular function
cytosolic small ribosomal subunit	Hs	cellular component
erythrocyte differentiation	Hs	biological process
maturation of SSU-rRNA	Hs	biological process
intracellular ribonucleoprotein complex	Hs	cellular component
killing of cells of other organism	Hs	biological process
ribosomal small subunit biogenesis	Hs	biological process
protein homodimerization activity	Hs	molecular function
defense response to Gram-negative bacterium	Hs	biological process
protein tetramerization	Hs	biological process
antimicrobial humoral immune response mediated by antimicrobial peptide	Hs	biological process
extracellular exosome	Hs	cellular component

GO (Blast)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	216	1.47e-73
structural constituent of ribosome	Hs	molecular function	216	1.47e-73
protein binding	Hs	molecular function	216	1.47e-73
intracellular	Hs	cellular component	216	1.47e-73
nucleus	Hs	cellular component	216	1.47e-73
nucleoplasm	Hs	cellular component	216	1.47e-73
nucleolus	Hs	cellular component	216	1.47e-73
cytoplasm	Hs	cellular component	216	1.47e-73
cytosol	Hs	cellular component	216	1.47e-73
ribosome	Hs	cellular component	216	1.47e-73
focal adhesion	Hs	cellular component	216	1.47e-73
membrane	Hs	cellular component	216	1.47e-73
fibroblast growth factor binding	Hs	molecular function	216	1.47e-73
protein kinase binding	Hs	molecular function	216	1.47e-73
cytosolic small ribosomal subunit	Hs	cellular component	216	1.47e-73
intracellular ribonucleoprotein complex	Hs	cellular component	216	1.47e-73
protein homodimerization activity	Hs	molecular function	216	1.47e-73
extracellular exosome	Hs	cellular component	216	1.47e-73

GO (InterProScan)