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Gene Card

Best human hits

FAU; RPS27A; UBB

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00001295

Gene Model ID

KH2012:KH.C10.10

Location

KhC10:827281..828104

Transcript Models and Sequences

  KH2012:KH.C10.10.v1.A.nonSL10-1
KH2012:KH.C10.10.v1.A.nonSL1-1
KH2012:KH.C10.10.v1.A.nonSL11-1
KH2012:KH.C10.10.v1.A.nonSL13-1
KH2012:KH.C10.10.v1.A.nonSL14-1
KH2012:KH.C10.10.v1.A.nonSL15-1
KH2012:KH.C10.10.v1.A.nonSL16-1
KH2012:KH.C10.10.v1.A.nonSL18-1
KH2012:KH.C10.10.v1.A.nonSL19-1
KH2012:KH.C10.10.v1.A.nonSL20-1
KH2012:KH.C10.10.v1.A.nonSL2-1
KH2012:KH.C10.10.v1.A.nonSL21-1
KH2012:KH.C10.10.v1.A.nonSL22-1
KH2012:KH.C10.10.v1.A.nonSL23-1
KH2012:KH.C10.10.v1.A.nonSL24-1
KH2012:KH.C10.10.v1.A.nonSL25-1
KH2012:KH.C10.10.v1.A.nonSL26-1
KH2012:KH.C10.10.v1.A.nonSL27-1
KH2012:KH.C10.10.v1.A.nonSL28-1
KH2012:KH.C10.10.v1.A.nonSL29-1
KH2012:KH.C10.10.v1.A.nonSL30-1
KH2012:KH.C10.10.v1.A.nonSL3-1
KH2012:KH.C10.10.v1.A.nonSL31-1
KH2012:KH.C10.10.v1.A.nonSL32-1
KH2012:KH.C10.10.v1.A.nonSL33-1
KH2012:KH.C10.10.v1.A.nonSL4-1
KH2012:KH.C10.10.v1.A.nonSL5-1
KH2012:KH.C10.10.v1.A.nonSL6-1
KH2012:KH.C10.10.v1.A.nonSL7-1
KH2012:KH.C10.10.v1.A.nonSL8-1
KH2012:KH.C10.10.v1.A.nonSL9-1
KH2012:KH.C10.10.v1.A.SL12-1
KH2012:KH.C10.10.v1.A.SL17-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000014899
NCBI Reference Sequence XM_009861566.2
Collections

Gateway full ORF

2 results

cima821746

Plate: VES60_C05

cima8112001

Plate: VES74_D04

Gene collection 1 (N. Satoh)

2 results

ciad015d10

Plate: R1CiGC02j05

ciad070f10

Plate: R1CiGC07c05

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
Ubiquitin_dom ProSiteProfiles Ubiquitin domain
Ubiquitin-like_domsf SUPERFAMILY Ubiquitin-like domain superfamily
Ubiquitin_dom Pfam Ubiquitin domain
Ribosomal_S30 Pfam Ribosomal protein S30
Ubiquitin_dom SMART Ubiquitin domain

GOSlim

36 results

GO Term Annotation Origin Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Orthology biological process
RNA binding Orthology molecular function
structural constituent of ribosome Orthology molecular function
protein binding Orthology molecular function
extracellular space Orthology cellular component
intracellular Orthology cellular component
nucleus Blast cellular component
nucleoplasm Orthology cellular component
nucleolus Blast cellular component
cytoplasm Blast cellular component
mitochondrion Blast cellular component
endoplasmic reticulum membrane Blast cellular component
cytosol Orthology cellular component
ribosome Orthology cellular component
plasma membrane Blast cellular component
translational initiation Orthology biological process
SRP-dependent cotranslational protein targeting to membrane Orthology biological process
membrane Blast cellular component
vesicle Blast cellular component
neuron projection Blast cellular component
neuronal cell body Blast cellular component
myelin sheath Blast cellular component
innate immune response Orthology biological process
metal ion binding Blast molecular function
extracellular exosome Blast cellular component
RNA processing Orthology biological process
intracellular organelle part Orthology cellular component
response to bacterium Orthology biological process
immune response Orthology biological process
defense response Orthology biological process
whole membrane Blast cellular component
mitochondrial membrane Blast cellular component
bounding membrane of organelle Blast cellular component
endosome Blast cellular component
cytoplasmic vesicle Blast cellular component
endoplasmic reticulum part Blast cellular component

GO (Orthology)

20 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Hs biological process
innate immune response in mucosa Hs biological process
RNA binding Hs molecular function
structural constituent of ribosome Hs molecular function
protein binding Hs molecular function
extracellular space Hs cellular component
intracellular Hs cellular component
nucleoplasm Hs cellular component
cytosol Hs cellular component
ribosome Hs cellular component
rRNA processing Hs biological process
translation Hs biological process
translational initiation Hs biological process
SRP-dependent cotranslational protein targeting to membrane Hs biological process
small ribosomal subunit Hs cellular component
antibacterial humoral response Hs biological process
cytosolic small ribosomal subunit Hs cellular component
intracellular ribonucleoprotein complex Hs cellular component
defense response to Gram-positive bacterium Hs biological process
antimicrobial humoral immune response mediated by antimicrobial peptide Hs biological process

GO (Blast)

29 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA binding Hs molecular function 159 1.97e-51
structural constituent of ribosome Hs molecular function 159 1.97e-51
protein binding Hs molecular function 159 1.97e-51
extracellular space Hs cellular component 159 1.97e-51
intracellular Hs cellular component 159 1.97e-51
nucleus Hs cellular component 42.7 9.26e-06
nucleoplasm Hs cellular component 159 1.97e-51
nucleolus Hs cellular component 42.7 9.26e-06
cytoplasm Hs cellular component 42.7 9.26e-06
mitochondrion Hs cellular component 42.0 2.11e-05
mitochondrial outer membrane Hs cellular component 42.7 9.26e-06
endoplasmic reticulum membrane Hs cellular component 42.7 9.26e-06
cytosol Hs cellular component 159 1.97e-51
ribosome Hs cellular component 159 1.97e-51
plasma membrane Hs cellular component 42.7 9.26e-06
endosome membrane Hs cellular component 42.7 9.26e-06
small ribosomal subunit Hs cellular component 159 1.97e-51
membrane Hs cellular component 42.7 9.26e-06
cytosolic small ribosomal subunit Hs cellular component 159 1.97e-51
intracellular ribonucleoprotein complex Hs cellular component 159 1.97e-51
endocytic vesicle membrane Hs cellular component 42.7 9.26e-06
vesicle Hs cellular component 42.7 9.26e-06
neuron projection Hs cellular component 42.0 2.11e-05
neuronal cell body Hs cellular component 42.0 2.11e-05
myelin sheath Hs cellular component 42.7 9.26e-06
host cell Hs cellular component 42.7 9.26e-06
endoplasmic reticulum quality control compartment Hs cellular component 42.7 9.26e-06
metal ion binding Hs molecular function 42.7 9.26e-06
extracellular exosome Hs cellular component 42.7 9.26e-06

GO (InterProScan)

5 results

GO Term Analysis Type e-value
structural constituent of ribosome Pfam molecular function 1.6E-29
protein binding Pfam molecular function 7.4E-13
intracellular Pfam cellular component 1.6E-29
ribosome Pfam cellular component 1.6E-29
translation Pfam biological process 1.6E-29

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